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  5. MA_86877g0010

MA_86877g0010


Description : (at1g69530 : 387.0) Member of Alpha-Expansin Gene Family. Naming convention from the Expansin Working Group (Kende et al, Plant Mol Bio). Involved in the formation of nematode-induced syncytia in roots of Arabidopsis thaliana.; expansin A1 (EXPA1); CONTAINS InterPro DOMAIN/s: Pollen allergen, N-terminal (InterPro:IPR014734), Rare lipoprotein A (InterPro:IPR005132), Pollen allergen/expansin, C-terminal (InterPro:IPR007117), Barwin-related endoglucanase (InterPro:IPR009009), Expansin (InterPro:IPR002963), Expansin/Lol pI (InterPro:IPR007118), Expansin 45, endoglucanase-like (InterPro:IPR007112); BEST Arabidopsis thaliana protein match is: expansin A15 (TAIR:AT2G03090.1). & (q40636|expa2_orysa : 358.0) Expansin-A2 precursor (OsEXPA2) (Alpha-expansin-2) (OsEXP2) (OsaEXPa1.23) (RiExB) (RiExC) - Oryza sativa (Rice) & (reliability: 774.0) & (original description: no original description)


Gene families : OG_42_0000014 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000014_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Picea release: MA_86877g0010
Cluster HCCA clusters: Cluster_265

Target Alias Description ECC score Gene Family Method Actions
143857 No alias expansin A4 0.03 Orthogroups_2024-Update
419575 No alias expansin A16 0.04 Orthogroups_2024-Update
75237 No alias expansin A7 0.03 Orthogroups_2024-Update
A4A49_04302 No alias expansin-a10 0.03 Orthogroups_2024-Update
A4A49_12237 No alias expansin-a15 0.03 Orthogroups_2024-Update
At5g39270 No alias Expansin-A22 [Source:UniProtKB/Swiss-Prot;Acc:Q9FL80] 0.03 Orthogroups_2024-Update
Bradi2g10320 No alias expansin A14 0.03 Orthogroups_2024-Update
Bradi5g19340 No alias expansin A13 0.03 Orthogroups_2024-Update
Brara.B03141.1 No alias alpha-class expansin 0.03 Orthogroups_2024-Update
Brara.F03390.1 No alias alpha-class expansin 0.03 Orthogroups_2024-Update
GRMZM2G072121 No alias expansin A13 0.02 Orthogroups_2024-Update
Glyma.06G021700 No alias expansin 11 0.03 Orthogroups_2024-Update
Glyma.18G265400 No alias expansin A23 0.04 Orthogroups_2024-Update
LOC_Os06g50400 No alias expansin precursor, putative, expressed 0.02 Orthogroups_2024-Update
MA_10377235g0010 No alias (at2g40610 : 412.0) member of Alpha-Expansin Gene... 0.03 Orthogroups_2024-Update
MA_172610g0010 No alias (at2g40610 : 331.0) member of Alpha-Expansin Gene... 0.03 Orthogroups_2024-Update
MA_316222g0010 No alias (at2g40610 : 383.0) member of Alpha-Expansin Gene... 0.03 Orthogroups_2024-Update
MA_61945g0010 No alias (q40636|expa2_orysa : 398.0) Expansin-A2 precursor... 0.05 Orthogroups_2024-Update
MA_75790g0010 No alias (at5g05290 : 306.0) Encodes an expansin. Naming... 0.03 Orthogroups_2024-Update
Mp1g22720.1 No alias Expansin-A4 OS=Arabidopsis thaliana... 0.02 Orthogroups_2024-Update
Mp1g26350.1 No alias alpha-class expansin 0.02 Orthogroups_2024-Update
Potri.006G086100 No alias Barwin-like endoglucanases superfamily protein 0.03 Orthogroups_2024-Update
Potri.008G088300 No alias expansin A1 0.02 Orthogroups_2024-Update
Potri.016G097500 No alias expansin A4 0.02 Orthogroups_2024-Update
Potri.017G140000 No alias expansin A13 0.03 Orthogroups_2024-Update
Seita.7G029300.1 No alias alpha-class expansin 0.03 Orthogroups_2024-Update
Solyc05g007830 No alias expansin12 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0000145 exocyst IEP Predicted GO
BP GO:0006887 exocytosis IEP Predicted GO
MF GO:0016788 hydrolase activity, acting on ester bonds IEP Predicted GO
BP GO:0032940 secretion by cell IEP Predicted GO
CC GO:0044448 cell cortex part IEP Predicted GO
BP GO:0046903 secretion IEP Predicted GO
MF GO:0050661 NADP binding IEP Predicted GO
CC GO:0099023 tethering complex IEP Predicted GO
InterPro domains Description Start Stop
IPR009009 RlpA-like_DPBB 40 117
IPR007117 Expansin_CBD 128 204
No external refs found!