Solyc10g085400

Description : D-alanine-D-alanine ligase family (AHRD V3.3 *** AT3G08840.2)

Gene families : OG_42_0005768 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0005768_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Solanum release: Solyc10g085400
Cluster	HCCA clusters: Cluster_162

Target	Alias	Description	ECC score	Gene Family Method	Actions
HORVU2Hr1G015430.1	No alias	D-alanine	0.04	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0008716	D-alanine-D-alanine ligase activity	IEA	InterProScan predictions
MF	GO:0016874	ligase activity	None	Extended
MF	GO:0016879	ligase activity, forming carbon-nitrogen bonds	None	Extended
MF	GO:0016881	acid-amino acid ligase activity	None	Extended

Type	GO Term	Name	Evidence	Source
BP	GO:0006399	tRNA metabolic process	IEP	Predicted GO
BP	GO:0008033	tRNA processing	IEP	Predicted GO
BP	GO:0034470	ncRNA processing	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR011127	Dala_Dala_lig_N	82	197
IPR011127	Dala_Dala_lig_N	494	666
IPR011095	Dala_Dala_lig_C	239	456
IPR011095	Dala_Dala_lig_C	820	924

External Links

No external refs found!