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Description : (at5g52630 : 608.0) Encodes a member of the DYW subfamily of pentatricopeptide repeat (PPR) proteins. Loss of MEF1 function affects RNA editing at specific sites in the mitochondrial genome but do not exhibit obvious phenotypes.; mitochondrial RNAediting factor 1 (MEF1); CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT5G04780.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (q76c99|rf1_orysa : 100.0) Rf1 protein, mitochondrial precursor (PPR protein) (Fertility restorer) (Restorer for CMS) - Oryza sativa (Rice) & (reliability: 1216.0) & (original description: no original description)
Gene families : OG_42_0000001 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | Picea release: MA_8893194g0010 | |
| Cluster | HCCA clusters: Cluster_97 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| At4g13650 | No alias | Pentatricopeptide repeat-containing protein At4g13650... | 0.03 | Orthogroups_2024-Update | |
| At5g52630 | No alias | Putative pentatricopeptide repeat-containing protein... | 0.03 | Orthogroups_2024-Update | |
| Bradi1g36900 | No alias | Pentatricopeptide repeat (PPR-like) superfamily protein | 0.03 | Orthogroups_2024-Update | |
| Bradi2g55230 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.03 | Orthogroups_2024-Update | |
| Glyma.05G244300 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.02 | Orthogroups_2024-Update | |
| Glyma.09G168800 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.02 | Orthogroups_2024-Update | |
| Glyma.12G183600 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.03 | Orthogroups_2024-Update | |
| PSME_00012885-RA | No alias | (at1g08070 : 603.0) Encodes a chloroplast RNA editing... | 0.05 | Orthogroups_2024-Update | |
| PSME_00017551-RA | No alias | (at4g18750 : 421.0) Encodes a pentatricopeptide (PPR)... | 0.03 | Orthogroups_2024-Update | |
| PSME_00021863-RA | No alias | (at2g22070 : 612.0) pentatricopeptide (PPR)... | 0.03 | Orthogroups_2024-Update | |
| PSME_00032004-RA | No alias | (at1g19720 : 530.0) Pentatricopeptide repeat (PPR-like)... | 0.07 | Orthogroups_2024-Update | |
| PSME_00048055-RA | No alias | (at4g13650 : 598.0) Pentatricopeptide repeat (PPR)... | 0.04 | Orthogroups_2024-Update | |
| Potri.003G191000 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.02 | Orthogroups_2024-Update | |
| Potri.004G059400 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.03 | Orthogroups_2024-Update | |
| Potri.013G058900 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.02 | Orthogroups_2024-Update | |
| Potri.016G077700 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.03 | Orthogroups_2024-Update | |
| Solyc01g081560 | No alias | LOW QUALITY:Pentatricopeptide repeat-containing protein... | 0.02 | Orthogroups_2024-Update | |
| Solyc07g055310 | No alias | Pentatricopeptide repeat-containing protein (AHRD V3.3... | 0.02 | Orthogroups_2024-Update | |
| Solyc11g067210 | No alias | Pentatricopeptide repeat-containing protein (AHRD V3.3... | 0.02 | Orthogroups_2024-Update | |
| Solyc11g071370 | No alias | Pentatricopeptide repeat-containing family protein (AHRD... | 0.02 | Orthogroups_2024-Update | |
| Sopen01g002910 | No alias | PPR repeat | 0.02 | Orthogroups_2024-Update | |
| Sopen02g033370 | No alias | PPR repeat family | 0.02 | Orthogroups_2024-Update | |
| Sopen03g002990 | No alias | PPR repeat family | 0.02 | Orthogroups_2024-Update | |
| Sopen04g036510 | No alias | PPR repeat family | 0.03 | Orthogroups_2024-Update | |
| Sopen06g035950 | No alias | PPR repeat family | 0.03 | Orthogroups_2024-Update | |
| Sopen11g001900 | No alias | PPR repeat | 0.02 | Orthogroups_2024-Update | |
| Sopen11g029050 | No alias | PPR repeat family | 0.04 | Orthogroups_2024-Update |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0008270 | zinc ion binding | IEA | InterProScan predictions |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No Predicted GO terms available for this sequence |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR002885 | Pentatricopeptide_repeat | 414 | 440 |
| IPR002885 | Pentatricopeptide_repeat | 111 | 136 |
| IPR002885 | Pentatricopeptide_repeat | 485 | 508 |
| IPR002885 | Pentatricopeptide_repeat | 238 | 285 |
| IPR002885 | Pentatricopeptide_repeat | 139 | 182 |
| IPR002885 | Pentatricopeptide_repeat | 339 | 386 |
| IPR032867 | DYW_dom | 513 | 636 |
| No external refs found! |