MA_8945353g0010


Description : (at3g28860 : 432.0) Belongs to the family of ATP-binding cassette (ABC) transporters. Also known as AtMDR11 and PGP19. Possibly regulates auxin-dependent responses by influencing basipetal auxin transport in the root. Acts upstream of phyA in regulating hypocotyl elongation and gravitropic response. Exerts nonredundant, partially overlapping functions with the ABC transporter encoded by AtPGP1.; ATP binding cassette subfamily B19 (ABCB19); FUNCTIONS IN: ATPase activity, coupled to transmembrane movement of substances, auxin efflux transmembrane transporter activity; INVOLVED IN: in 14 processes; LOCATED IN: plasma membrane; EXPRESSED IN: 28 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ABC transporter-like (InterPro:IPR003439), ABC transporter, transmembrane domain, type 1 (InterPro:IPR011527), ABC transporter integral membrane type 1 (InterPro:IPR017940), ABC transporter, transmembrane domain (InterPro:IPR001140), ABC transporter, conserved site (InterPro:IPR017871); BEST Arabidopsis thaliana protein match is: ATP binding cassette subfamily B1 (TAIR:AT2G36910.1); Has 832220 Blast hits to 388750 proteins in 4155 species: Archae - 14331; Bacteria - 653917; Metazoa - 17455; Fungi - 11958; Plants - 9253; Viruses - 33; Other Eukaryotes - 125273 (source: NCBI BLink). & (q6yuu5|mdr_orysa : 176.0) Putative multidrug resistance protein (P-glycoprotein) - Oryza sativa (Rice) & (reliability: 864.0) & (original description: no original description)


Gene families : OG_42_0000040 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000040_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Picea release: MA_8945353g0010
Cluster HCCA clusters: Cluster_24

Target Alias Description ECC score Gene Family Method Actions
123915 No alias P-glycoprotein 11 0.03 Orthogroups_2024-Update
A4A49_00814 No alias abc transporter b family member 4 0.03 Orthogroups_2024-Update
A4A49_01823 No alias putative abc transporter b family member 8 0.03 Orthogroups_2024-Update
At1g27940 No alias PGP13 [Source:UniProtKB/TrEMBL;Acc:A0A178W4F4] 0.03 Orthogroups_2024-Update
Brara.I00320.1 No alias subfamily ABCB transporter 0.04 Orthogroups_2024-Update
Brara.I00328.1 No alias subfamily ABCB transporter 0.03 Orthogroups_2024-Update
Brara.I02993.1 No alias subfamily ABCB transporter 0.03 Orthogroups_2024-Update
Brara.J00114.1 No alias subfamily ABCB transporter 0.03 Orthogroups_2024-Update
GRMZM2G315375 No alias ATP binding cassette subfamily B1 0.03 Orthogroups_2024-Update
GRMZM5G833207 No alias ATP binding cassette subfamily B4 0.03 Orthogroups_2024-Update
Glyma.16G078100 No alias ABC transporter family protein 0.03 Orthogroups_2024-Update
LOC_Os01g50160 No alias MDR-like ABC transporter, putative, expressed 0.02 Orthogroups_2024-Update
MA_107576g0010 No alias (q6yuu5|mdr_orysa : 852.0) Putative multidrug resistance... 0.04 Orthogroups_2024-Update
MA_83806g0010 No alias (q6yuu5|mdr_orysa : 1360.0) Putative multidrug... 0.05 Orthogroups_2024-Update
PSME_00006519-RA No alias (at3g28345 : 1327.0) ABC transporter family protein;... 0.03 Orthogroups_2024-Update
PSME_00030389-RA No alias (at4g25960 : 993.0) P-glycoprotein 2 (PGP2); FUNCTIONS... 0.03 Orthogroups_2024-Update
PSME_00035518-RA No alias (at2g39480 : 1505.0) P-glycoprotein 6 (PGP6); FUNCTIONS... 0.03 Orthogroups_2024-Update
Potri.018G087100 No alias ABC transporter family protein 0.02 Orthogroups_2024-Update
Sobic.003G281400.1 No alias subfamily ABCB transporter 0.04 Orthogroups_2024-Update
Sobic.007G163800.1 No alias subfamily ABCB transporter 0.03 Orthogroups_2024-Update
Sopen06g004020 No alias ABC transporter transmembrane region 0.03 Orthogroups_2024-Update
evm.model.tig00000025.1 No alias (at2g47000 : 429.0) Multidrug resistance P-glycoprotein... 0.01 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA InterProScan predictions
CC GO:0016021 integral component of membrane IEA InterProScan predictions
MF GO:0042626 ATPase activity, coupled to transmembrane movement of substances IEA InterProScan predictions
BP GO:0055085 transmembrane transport IEA InterProScan predictions
Type GO Term Name Evidence Source
MF GO:0003774 motor activity IEP Predicted GO
CC GO:0016459 myosin complex IEP Predicted GO
CC GO:0044430 cytoskeletal part IEP Predicted GO
InterPro domains Description Start Stop
IPR011527 ABC1_TM_dom 64 309
No external refs found!