Description : (at3g28860 : 432.0) Belongs to the family of ATP-binding cassette (ABC) transporters. Also known as AtMDR11 and PGP19. Possibly regulates auxin-dependent responses by influencing basipetal auxin transport in the root. Acts upstream of phyA in regulating hypocotyl elongation and gravitropic response. Exerts nonredundant, partially overlapping functions with the ABC transporter encoded by AtPGP1.; ATP binding cassette subfamily B19 (ABCB19); FUNCTIONS IN: ATPase activity, coupled to transmembrane movement of substances, auxin efflux transmembrane transporter activity; INVOLVED IN: in 14 processes; LOCATED IN: plasma membrane; EXPRESSED IN: 28 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ABC transporter-like (InterPro:IPR003439), ABC transporter, transmembrane domain, type 1 (InterPro:IPR011527), ABC transporter integral membrane type 1 (InterPro:IPR017940), ABC transporter, transmembrane domain (InterPro:IPR001140), ABC transporter, conserved site (InterPro:IPR017871); BEST Arabidopsis thaliana protein match is: ATP binding cassette subfamily B1 (TAIR:AT2G36910.1); Has 832220 Blast hits to 388750 proteins in 4155 species: Archae - 14331; Bacteria - 653917; Metazoa - 17455; Fungi - 11958; Plants - 9253; Viruses - 33; Other Eukaryotes - 125273 (source: NCBI BLink). & (q6yuu5|mdr_orysa : 176.0) Putative multidrug resistance protein (P-glycoprotein) - Oryza sativa (Rice) & (reliability: 864.0) & (original description: no original description)
Gene families : OG_42_0000040 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000040_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | Picea release: MA_8945353g0010 | |
Cluster | HCCA clusters: Cluster_24 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
123915 | No alias | P-glycoprotein 11 | 0.03 | Orthogroups_2024-Update | |
A4A49_00814 | No alias | abc transporter b family member 4 | 0.03 | Orthogroups_2024-Update | |
A4A49_01823 | No alias | putative abc transporter b family member 8 | 0.03 | Orthogroups_2024-Update | |
At1g27940 | No alias | PGP13 [Source:UniProtKB/TrEMBL;Acc:A0A178W4F4] | 0.03 | Orthogroups_2024-Update | |
Brara.I00320.1 | No alias | subfamily ABCB transporter | 0.04 | Orthogroups_2024-Update | |
Brara.I00328.1 | No alias | subfamily ABCB transporter | 0.03 | Orthogroups_2024-Update | |
Brara.I02993.1 | No alias | subfamily ABCB transporter | 0.03 | Orthogroups_2024-Update | |
Brara.J00114.1 | No alias | subfamily ABCB transporter | 0.03 | Orthogroups_2024-Update | |
GRMZM2G315375 | No alias | ATP binding cassette subfamily B1 | 0.03 | Orthogroups_2024-Update | |
GRMZM5G833207 | No alias | ATP binding cassette subfamily B4 | 0.03 | Orthogroups_2024-Update | |
Glyma.16G078100 | No alias | ABC transporter family protein | 0.03 | Orthogroups_2024-Update | |
LOC_Os01g50160 | No alias | MDR-like ABC transporter, putative, expressed | 0.02 | Orthogroups_2024-Update | |
MA_107576g0010 | No alias | (q6yuu5|mdr_orysa : 852.0) Putative multidrug resistance... | 0.04 | Orthogroups_2024-Update | |
MA_83806g0010 | No alias | (q6yuu5|mdr_orysa : 1360.0) Putative multidrug... | 0.05 | Orthogroups_2024-Update | |
PSME_00006519-RA | No alias | (at3g28345 : 1327.0) ABC transporter family protein;... | 0.03 | Orthogroups_2024-Update | |
PSME_00030389-RA | No alias | (at4g25960 : 993.0) P-glycoprotein 2 (PGP2); FUNCTIONS... | 0.03 | Orthogroups_2024-Update | |
PSME_00035518-RA | No alias | (at2g39480 : 1505.0) P-glycoprotein 6 (PGP6); FUNCTIONS... | 0.03 | Orthogroups_2024-Update | |
Potri.018G087100 | No alias | ABC transporter family protein | 0.02 | Orthogroups_2024-Update | |
Sobic.003G281400.1 | No alias | subfamily ABCB transporter | 0.04 | Orthogroups_2024-Update | |
Sobic.007G163800.1 | No alias | subfamily ABCB transporter | 0.03 | Orthogroups_2024-Update | |
Sopen06g004020 | No alias | ABC transporter transmembrane region | 0.03 | Orthogroups_2024-Update | |
evm.model.tig00000025.1 | No alias | (at2g47000 : 429.0) Multidrug resistance P-glycoprotein... | 0.01 | Orthogroups_2024-Update |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0005524 | ATP binding | IEA | InterProScan predictions |
CC | GO:0016021 | integral component of membrane | IEA | InterProScan predictions |
MF | GO:0042626 | ATPase activity, coupled to transmembrane movement of substances | IEA | InterProScan predictions |
BP | GO:0055085 | transmembrane transport | IEA | InterProScan predictions |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0003774 | motor activity | IEP | Predicted GO |
CC | GO:0016459 | myosin complex | IEP | Predicted GO |
CC | GO:0044430 | cytoskeletal part | IEP | Predicted GO |
InterPro domains | Description | Start | Stop |
---|---|---|---|
IPR011527 | ABC1_TM_dom | 64 | 309 |
No external refs found! |