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  5. Solyc10g085750

Solyc10g085750


Description : Polyadenylate-binding protein (AHRD V3.3 *** K4D409_SOLLC)


Gene families : OG_42_0000711 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000711_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Solyc10g085750
Cluster HCCA clusters: Cluster_171

Target Alias Description ECC score Gene Family Method Actions
HORVU2Hr1G087390.3 No alias mRNA poly-A-tail binding factor *(PABP) 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA InterProScan predictions
MF GO:0003723 RNA binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0005543 phospholipid binding IEP Predicted GO
MF GO:0005544 calcium-dependent phospholipid binding IEP Predicted GO
BP GO:0006650 glycerophospholipid metabolic process IEP Predicted GO
BP GO:0030258 lipid modification IEP Predicted GO
BP GO:0046488 phosphatidylinositol metabolic process IEP Predicted GO
BP GO:0046834 lipid phosphorylation IEP Predicted GO
BP GO:0046854 phosphatidylinositol phosphorylation IEP Predicted GO
InterPro domains Description Start Stop
IPR002004 PABP_HYD 531 596
IPR000504 RRM_dom 296 364
IPR000504 RRM_dom 102 170
IPR000504 RRM_dom 14 83
IPR000504 RRM_dom 193 261
No external refs found!