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  5. Solyc10g085800

Solyc10g085800


Description : PLATZ transcription factor family protein (AHRD V3.3 *** G7IA73_MEDTR)


Gene families : OG_42_0000211 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000211_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Solyc10g085800
Cluster HCCA clusters: Cluster_281

Target Alias Description ECC score Gene Family Method Actions
A4A49_35279 No alias hypothetical protein 0.03 Orthogroups_2024-Update
Glyma.11G008900 No alias PLATZ transcription factor family protein 0.03 Orthogroups_2024-Update
PSME_00008672-RA No alias no hits & (original description: no original description) 0.02 Orthogroups_2024-Update
Pp1s102_87V6 No alias F6N18.8; zinc-binding family protein [Arabidopsis thaliana] 0.03 Orthogroups_2024-Update
Pp1s133_60V6 No alias F6N18.8; zinc-binding family protein [Arabidopsis thaliana] 0.03 Orthogroups_2024-Update
Seita.1G070800.1 No alias PLATZ-type transcription factor 0.02 Orthogroups_2024-Update
Sobic.006G197800.1 No alias PLATZ-type transcription factor 0.04 Orthogroups_2024-Update
Sopen10g035200 No alias PLATZ transcription factor 0.03 Orthogroups_2024-Update
Sopen12g005480 No alias PLATZ transcription factor 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000375 RNA splicing, via transesterification reactions IEP Predicted GO
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP Predicted GO
BP GO:0000398 mRNA splicing, via spliceosome IEP Predicted GO
CC GO:0000428 DNA-directed RNA polymerase complex IEP Predicted GO
MF GO:0003746 translation elongation factor activity IEP Predicted GO
MF GO:0005085 guanyl-nucleotide exchange factor activity IEP Predicted GO
MF GO:0005088 Ras guanyl-nucleotide exchange factor activity IEP Predicted GO
MF GO:0005089 Rho guanyl-nucleotide exchange factor activity IEP Predicted GO
CC GO:0005666 RNA polymerase III complex IEP Predicted GO
CC GO:0005681 spliceosomal complex IEP Predicted GO
BP GO:0006383 transcription by RNA polymerase III IEP Predicted GO
BP GO:0006414 translational elongation IEP Predicted GO
BP GO:0008380 RNA splicing IEP Predicted GO
MF GO:0016717 oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water IEP Predicted GO
MF GO:0017016 Ras GTPase binding IEP Predicted GO
MF GO:0017048 Rho GTPase binding IEP Predicted GO
CC GO:0030880 RNA polymerase complex IEP Predicted GO
MF GO:0031267 small GTPase binding IEP Predicted GO
CC GO:0044428 nuclear part IEP Predicted GO
MF GO:0045300 acyl-[acyl-carrier-protein] desaturase activity IEP Predicted GO
MF GO:0051020 GTPase binding IEP Predicted GO
CC GO:0055029 nuclear DNA-directed RNA polymerase complex IEP Predicted GO
CC GO:0061695 transferase complex, transferring phosphorus-containing groups IEP Predicted GO
InterPro domains Description Start Stop
IPR006734 DUF597 62 134
No external refs found!