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  5. MA_924620g0010

MA_924620g0010


Description : (q2hu68|h2a1_medtr : 180.0) Probable histone H2A.1 - Medicago truncatula (Barrel medic) & (at5g02560 : 172.0) Encodes HTA12, a histone H2A protein.; histone H2A 12 (HTA12); FUNCTIONS IN: DNA binding; INVOLVED IN: nucleosome assembly; LOCATED IN: nucleus, nucleosome; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Histone H2A (InterPro:IPR002119), Histone-fold (InterPro:IPR009072), Histone core (InterPro:IPR007125); BEST Arabidopsis thaliana protein match is: histone H2A 6 (TAIR:AT5G59870.1). & (reliability: 344.0) & (original description: no original description)


Gene families : OG_42_0000138 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000138_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Picea release: MA_924620g0010
Cluster HCCA clusters: Cluster_158

Target Alias Description ECC score Gene Family Method Actions
At1g51060 No alias Probable histone H2A.1 [Source:UniProtKB/Swiss-Prot;Acc:Q9C681] 0.03 Orthogroups_2024-Update
Cre06.g276950 No alias histone H2A 10 0.01 Orthogroups_2024-Update
GRMZM2G151826 No alias histone H2A 2 0.02 Orthogroups_2024-Update
HORVU0Hr1G013190.1 No alias histone *(H2A) 0.02 Orthogroups_2024-Update
HORVU4Hr1G070250.3 No alias histone *(H2A) 0.03 Orthogroups_2024-Update
HORVU5Hr1G105090.1 No alias histone *(H2A) 0.04 Orthogroups_2024-Update
HORVU6Hr1G006120.2 No alias histone *(H2A) 0.05 Orthogroups_2024-Update
HORVU6Hr1G092390.1 No alias histone *(H2A) 0.03 Orthogroups_2024-Update
LOC_Os07g36140 No alias core histone H2A/H2B/H3/H4, putative, expressed 0.03 Orthogroups_2024-Update
MA_10426943g0010 No alias (p50567|h2a_chlre : 132.0) Histone H2A - Chlamydomonas... 0.02 Orthogroups_2024-Update
PSME_00052764-RA No alias (p35063|h2ax_picab : 225.0) Histone H2AX - Picea abies... 0.03 Orthogroups_2024-Update
Seita.2G343400.1 No alias histone *(H2A) 0.02 Orthogroups_2024-Update
Sobic.002G276000.1 No alias histone *(H2A) 0.03 Orthogroups_2024-Update
Sopen09g005140 No alias Core histone H2A/H2B/H3/H4 0.03 Orthogroups_2024-Update
evm.model.contig_533.4 No alias (p16866|h2a4_volca : 182.0) Histone H2A-IV - Volvox... 0.01 Orthogroups_2024-Update

Type GO Term Name Evidence Source
CC GO:0000786 nucleosome IEA InterProScan predictions
MF GO:0003677 DNA binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0005507 copper ion binding IEP Predicted GO
CC GO:0005783 endoplasmic reticulum IEP Predicted GO
BP GO:0007010 cytoskeleton organization IEP Predicted GO
MF GO:0008131 primary amine oxidase activity IEP Predicted GO
MF GO:0016638 oxidoreductase activity, acting on the CH-NH2 group of donors IEP Predicted GO
MF GO:0016641 oxidoreductase activity, acting on the CH-NH2 group of donors, oxygen as acceptor IEP Predicted GO
MF GO:0016740 transferase activity IEP Predicted GO
MF GO:0016757 transferase activity, transferring glycosyl groups IEP Predicted GO
MF GO:0016758 transferase activity, transferring hexosyl groups IEP Predicted GO
MF GO:0030151 molybdenum ion binding IEP Predicted GO
BP GO:0042126 nitrate metabolic process IEP Predicted GO
BP GO:0042128 nitrate assimilation IEP Predicted GO
MF GO:0048038 quinone binding IEP Predicted GO
BP GO:0071941 nitrogen cycle metabolic process IEP Predicted GO
BP GO:2001057 reactive nitrogen species metabolic process IEP Predicted GO
InterPro domains Description Start Stop
IPR032454 Histone_H2A_C 99 131
IPR007125 Histone_H2A/H2B/H3 18 96
No external refs found!