MA_92651g0010


Description : (at5g62000 : 742.0) Encodes an auxin response factor. Mutants have many defects including enlarged rosette leaves, reduced fertility, later senescence, hypocotyl elongation defects, enlarged seeds and enlarged cotyledons. May not mediate auxin effects. Increase in seed size due to increased cell proliferation.; auxin response factor 2 (ARF2); FUNCTIONS IN: protein binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: in 7 processes; LOCATED IN: nucleus, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aux/IAA-ARF-dimerisation (InterPro:IPR011525), Transcriptional factor B3 (InterPro:IPR003340), AUX/IAA protein (InterPro:IPR003311), Auxin response factor (InterPro:IPR010525); BEST Arabidopsis thaliana protein match is: auxin response factor 1 (TAIR:AT1G59750.2). & (reliability: 1484.0) & (original description: no original description)


Gene families : OG_42_0000050 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000050_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Picea release: MA_92651g0010
Cluster HCCA clusters: Cluster_59

Target Alias Description ECC score Gene Family Method Actions
117217 No alias auxin response factor 6 0.03 Orthogroups_2024-Update
Bradi3g03407 No alias Transcriptional factor B3 family protein /... 0.03 Orthogroups_2024-Update
Bradi3g04920 No alias auxin response factor 6 0.04 Orthogroups_2024-Update
GRMZM2G137413 No alias auxin response factor 1 0.04 Orthogroups_2024-Update
GRMZM2G378580 No alias auxin response factor 2 0.03 Orthogroups_2024-Update
GRMZM2G702026 No alias auxin response factor 1 0.02 Orthogroups_2024-Update
Glyma.04G200600 No alias auxin response factor 2 0.04 Orthogroups_2024-Update
Glyma.05G200800 No alias auxin response factor 2 0.03 Orthogroups_2024-Update
Glyma.06G164900 No alias auxin response factor 2 0.03 Orthogroups_2024-Update
HORVU7Hr1G051930.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Mp4g11820.1 No alias transcription factor (ARF) 0.02 Orthogroups_2024-Update
PSME_00012134-RA No alias (at1g30330 : 662.0) Encodes a member of the auxin... 0.03 Orthogroups_2024-Update
PSME_00015886-RA No alias (at1g30330 : 314.0) Encodes a member of the auxin... 0.04 Orthogroups_2024-Update
PSME_00023067-RA No alias (at5g62000 : 335.0) Encodes an auxin response factor.... 0.04 Orthogroups_2024-Update
Potri.003G163600 No alias auxin response factor 2 0.03 Orthogroups_2024-Update
Potri.008G039000 No alias auxin response factor 16 0.03 Orthogroups_2024-Update
Pp1s119_32V6 No alias auxin response 0.02 Orthogroups_2024-Update
Seita.3G020000.1 No alias ARF-type transcription factor 0.03 Orthogroups_2024-Update
Seita.4G262300.1 No alias ARF-type transcription factor 0.03 Orthogroups_2024-Update
Sobic.008G096000.1 No alias ARF-type transcription factor 0.02 Orthogroups_2024-Update
Solyc12g042070 No alias Auxin Response Factor 2B 0.02 Orthogroups_2024-Update
Sopen03g037200 No alias Auxin response factor 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA InterProScan predictions
CC GO:0005634 nucleus IEA InterProScan predictions
BP GO:0006355 regulation of transcription, DNA-templated IEA InterProScan predictions
BP GO:0009725 response to hormone IEA InterProScan predictions
Type GO Term Name Evidence Source
CC GO:0000428 DNA-directed RNA polymerase complex IEP Predicted GO
MF GO:0003723 RNA binding IEP Predicted GO
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP Predicted GO
MF GO:0003950 NAD+ ADP-ribosyltransferase activity IEP Predicted GO
MF GO:0004197 cysteine-type endopeptidase activity IEP Predicted GO
MF GO:0004198 calcium-dependent cysteine-type endopeptidase activity IEP Predicted GO
MF GO:0004556 alpha-amylase activity IEP Predicted GO
MF GO:0004672 protein kinase activity IEP Predicted GO
MF GO:0005515 protein binding IEP Predicted GO
CC GO:0005665 RNA polymerase II, core complex IEP Predicted GO
BP GO:0006351 transcription, DNA-templated IEP Predicted GO
BP GO:0006366 transcription by RNA polymerase II IEP Predicted GO
BP GO:0006464 cellular protein modification process IEP Predicted GO
BP GO:0006468 protein phosphorylation IEP Predicted GO
BP GO:0006793 phosphorus metabolic process IEP Predicted GO
BP GO:0006796 phosphate-containing compound metabolic process IEP Predicted GO
BP GO:0006807 nitrogen compound metabolic process IEP Predicted GO
BP GO:0016070 RNA metabolic process IEP Predicted GO
MF GO:0016160 amylase activity IEP Predicted GO
MF GO:0016301 kinase activity IEP Predicted GO
BP GO:0016310 phosphorylation IEP Predicted GO
MF GO:0016740 transferase activity IEP Predicted GO
MF GO:0016763 transferase activity, transferring pentosyl groups IEP Predicted GO
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP Predicted GO
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP Predicted GO
BP GO:0018130 heterocycle biosynthetic process IEP Predicted GO
BP GO:0019438 aromatic compound biosynthetic process IEP Predicted GO
BP GO:0019538 protein metabolic process IEP Predicted GO
CC GO:0030880 RNA polymerase complex IEP Predicted GO
BP GO:0032774 RNA biosynthetic process IEP Predicted GO
MF GO:0034062 5'-3' RNA polymerase activity IEP Predicted GO
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP Predicted GO
BP GO:0036211 protein modification process IEP Predicted GO
BP GO:0043170 macromolecule metabolic process IEP Predicted GO
BP GO:0043412 macromolecule modification IEP Predicted GO
BP GO:0044238 primary metabolic process IEP Predicted GO
BP GO:0044260 cellular macromolecule metabolic process IEP Predicted GO
CC GO:0044451 nucleoplasm part IEP Predicted GO
CC GO:0055029 nuclear DNA-directed RNA polymerase complex IEP Predicted GO
CC GO:0061695 transferase complex, transferring phosphorus-containing groups IEP Predicted GO
BP GO:0071704 organic substance metabolic process IEP Predicted GO
BP GO:0097659 nucleic acid-templated transcription IEP Predicted GO
MF GO:0097747 RNA polymerase activity IEP Predicted GO
MF GO:0140096 catalytic activity, acting on a protein IEP Predicted GO
BP GO:1901362 organic cyclic compound biosynthetic process IEP Predicted GO
CC GO:1990234 transferase complex IEP Predicted GO
InterPro domains Description Start Stop
IPR003340 B3_DNA-bd 222 323
IPR010525 Auxin_resp 348 430
IPR033389 AUX/IAA_dom 810 918
No external refs found!