Description : (at5g62000 : 742.0) Encodes an auxin response factor. Mutants have many defects including enlarged rosette leaves, reduced fertility, later senescence, hypocotyl elongation defects, enlarged seeds and enlarged cotyledons. May not mediate auxin effects. Increase in seed size due to increased cell proliferation.; auxin response factor 2 (ARF2); FUNCTIONS IN: protein binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: in 7 processes; LOCATED IN: nucleus, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aux/IAA-ARF-dimerisation (InterPro:IPR011525), Transcriptional factor B3 (InterPro:IPR003340), AUX/IAA protein (InterPro:IPR003311), Auxin response factor (InterPro:IPR010525); BEST Arabidopsis thaliana protein match is: auxin response factor 1 (TAIR:AT1G59750.2). & (reliability: 1484.0) & (original description: no original description)
Gene families : OG_42_0000050 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000050_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | Picea release: MA_92651g0010 | |
Cluster | HCCA clusters: Cluster_59 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
117217 | No alias | auxin response factor 6 | 0.03 | Orthogroups_2024-Update | |
Bradi3g03407 | No alias | Transcriptional factor B3 family protein /... | 0.03 | Orthogroups_2024-Update | |
Bradi3g04920 | No alias | auxin response factor 6 | 0.04 | Orthogroups_2024-Update | |
GRMZM2G137413 | No alias | auxin response factor 1 | 0.04 | Orthogroups_2024-Update | |
GRMZM2G378580 | No alias | auxin response factor 2 | 0.03 | Orthogroups_2024-Update | |
GRMZM2G702026 | No alias | auxin response factor 1 | 0.02 | Orthogroups_2024-Update | |
Glyma.04G200600 | No alias | auxin response factor 2 | 0.04 | Orthogroups_2024-Update | |
Glyma.05G200800 | No alias | auxin response factor 2 | 0.03 | Orthogroups_2024-Update | |
Glyma.06G164900 | No alias | auxin response factor 2 | 0.03 | Orthogroups_2024-Update | |
HORVU7Hr1G051930.1 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
Mp4g11820.1 | No alias | transcription factor (ARF) | 0.02 | Orthogroups_2024-Update | |
PSME_00012134-RA | No alias | (at1g30330 : 662.0) Encodes a member of the auxin... | 0.03 | Orthogroups_2024-Update | |
PSME_00015886-RA | No alias | (at1g30330 : 314.0) Encodes a member of the auxin... | 0.04 | Orthogroups_2024-Update | |
PSME_00023067-RA | No alias | (at5g62000 : 335.0) Encodes an auxin response factor.... | 0.04 | Orthogroups_2024-Update | |
Potri.003G163600 | No alias | auxin response factor 2 | 0.03 | Orthogroups_2024-Update | |
Potri.008G039000 | No alias | auxin response factor 16 | 0.03 | Orthogroups_2024-Update | |
Pp1s119_32V6 | No alias | auxin response | 0.02 | Orthogroups_2024-Update | |
Seita.3G020000.1 | No alias | ARF-type transcription factor | 0.03 | Orthogroups_2024-Update | |
Seita.4G262300.1 | No alias | ARF-type transcription factor | 0.03 | Orthogroups_2024-Update | |
Sobic.008G096000.1 | No alias | ARF-type transcription factor | 0.02 | Orthogroups_2024-Update | |
Solyc12g042070 | No alias | Auxin Response Factor 2B | 0.02 | Orthogroups_2024-Update | |
Sopen03g037200 | No alias | Auxin response factor | 0.02 | Orthogroups_2024-Update |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0003677 | DNA binding | IEA | InterProScan predictions |
CC | GO:0005634 | nucleus | IEA | InterProScan predictions |
BP | GO:0006355 | regulation of transcription, DNA-templated | IEA | InterProScan predictions |
BP | GO:0009725 | response to hormone | IEA | InterProScan predictions |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
CC | GO:0000428 | DNA-directed RNA polymerase complex | IEP | Predicted GO |
MF | GO:0003723 | RNA binding | IEP | Predicted GO |
MF | GO:0003899 | DNA-directed 5'-3' RNA polymerase activity | IEP | Predicted GO |
MF | GO:0003950 | NAD+ ADP-ribosyltransferase activity | IEP | Predicted GO |
MF | GO:0004197 | cysteine-type endopeptidase activity | IEP | Predicted GO |
MF | GO:0004198 | calcium-dependent cysteine-type endopeptidase activity | IEP | Predicted GO |
MF | GO:0004556 | alpha-amylase activity | IEP | Predicted GO |
MF | GO:0004672 | protein kinase activity | IEP | Predicted GO |
MF | GO:0005515 | protein binding | IEP | Predicted GO |
CC | GO:0005665 | RNA polymerase II, core complex | IEP | Predicted GO |
BP | GO:0006351 | transcription, DNA-templated | IEP | Predicted GO |
BP | GO:0006366 | transcription by RNA polymerase II | IEP | Predicted GO |
BP | GO:0006464 | cellular protein modification process | IEP | Predicted GO |
BP | GO:0006468 | protein phosphorylation | IEP | Predicted GO |
BP | GO:0006793 | phosphorus metabolic process | IEP | Predicted GO |
BP | GO:0006796 | phosphate-containing compound metabolic process | IEP | Predicted GO |
BP | GO:0006807 | nitrogen compound metabolic process | IEP | Predicted GO |
BP | GO:0016070 | RNA metabolic process | IEP | Predicted GO |
MF | GO:0016160 | amylase activity | IEP | Predicted GO |
MF | GO:0016301 | kinase activity | IEP | Predicted GO |
BP | GO:0016310 | phosphorylation | IEP | Predicted GO |
MF | GO:0016740 | transferase activity | IEP | Predicted GO |
MF | GO:0016763 | transferase activity, transferring pentosyl groups | IEP | Predicted GO |
MF | GO:0016772 | transferase activity, transferring phosphorus-containing groups | IEP | Predicted GO |
MF | GO:0016773 | phosphotransferase activity, alcohol group as acceptor | IEP | Predicted GO |
BP | GO:0018130 | heterocycle biosynthetic process | IEP | Predicted GO |
BP | GO:0019438 | aromatic compound biosynthetic process | IEP | Predicted GO |
BP | GO:0019538 | protein metabolic process | IEP | Predicted GO |
CC | GO:0030880 | RNA polymerase complex | IEP | Predicted GO |
BP | GO:0032774 | RNA biosynthetic process | IEP | Predicted GO |
MF | GO:0034062 | 5'-3' RNA polymerase activity | IEP | Predicted GO |
BP | GO:0034654 | nucleobase-containing compound biosynthetic process | IEP | Predicted GO |
BP | GO:0036211 | protein modification process | IEP | Predicted GO |
BP | GO:0043170 | macromolecule metabolic process | IEP | Predicted GO |
BP | GO:0043412 | macromolecule modification | IEP | Predicted GO |
BP | GO:0044238 | primary metabolic process | IEP | Predicted GO |
BP | GO:0044260 | cellular macromolecule metabolic process | IEP | Predicted GO |
CC | GO:0044451 | nucleoplasm part | IEP | Predicted GO |
CC | GO:0055029 | nuclear DNA-directed RNA polymerase complex | IEP | Predicted GO |
CC | GO:0061695 | transferase complex, transferring phosphorus-containing groups | IEP | Predicted GO |
BP | GO:0071704 | organic substance metabolic process | IEP | Predicted GO |
BP | GO:0097659 | nucleic acid-templated transcription | IEP | Predicted GO |
MF | GO:0097747 | RNA polymerase activity | IEP | Predicted GO |
MF | GO:0140096 | catalytic activity, acting on a protein | IEP | Predicted GO |
BP | GO:1901362 | organic cyclic compound biosynthetic process | IEP | Predicted GO |
CC | GO:1990234 | transferase complex | IEP | Predicted GO |
No external refs found! |