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  5. MA_93486g0010

MA_93486g0010


Description : (at5g19780 : 800.0) Encodes an isoform of alpha tubulin. Closely related to adjacent gene TUA3 suggesting recent duplication.; tubulin alpha-5 (TUA5); FUNCTIONS IN: structural constituent of cytoskeleton; INVOLVED IN: response to cadmium ion, microtubule-based process; LOCATED IN: tubulin complex, cytosol, cell wall, membrane; EXPRESSED IN: 6 plant structures; CONTAINS InterPro DOMAIN/s: Alpha tubulin (InterPro:IPR002452), Tubulin (InterPro:IPR000217), Tubulin/FtsZ, GTPase domain (InterPro:IPR003008), Tubulin/FtsZ, N-terminal (InterPro:IPR019746), Tubulin/FtsZ, C-terminal (InterPro:IPR008280), Beta tubulin, autoregulation binding site (InterPro:IPR013838), Tubulin, conserved site (InterPro:IPR017975), Tubulin/FtsZ, 2-layer sandwich domain (InterPro:IPR018316); BEST Arabidopsis thaliana protein match is: tubulin alpha-3 (TAIR:AT5G19770.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (p33627|tba6_maize : 799.0) Tubulin alpha-6 chain (Alpha-6 tubulin) - Zea mays (Maize) & (reliability: 1600.0) & (original description: no original description)


Gene families : OG_42_0000484 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000484_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Picea release: MA_93486g0010
Cluster HCCA clusters: Cluster_243

Target Alias Description ECC score Gene Family Method Actions
230143 No alias tubulin alpha-4 chain 0.02 Orthogroups_2024-Update
232506 No alias tubulin alpha-2 chain 0.03 Orthogroups_2024-Update
A4A49_65840 No alias tubulin alpha chain 0.03 Orthogroups_2024-Update
Brara.E01685.1 No alias alpha-Tubulin component *(TUA) of alpha-beta-Tubulin heterodimer 0.07 Orthogroups_2024-Update
Brara.F00331.1 No alias alpha-Tubulin component *(TUA) of alpha-beta-Tubulin heterodimer 0.03 Orthogroups_2024-Update
Brara.J01612.1 No alias alpha-Tubulin component *(TUA) of alpha-beta-Tubulin heterodimer 0.04 Orthogroups_2024-Update
Brara.J01613.1 No alias alpha-Tubulin component *(TUA) of alpha-beta-Tubulin heterodimer 0.04 Orthogroups_2024-Update
Cre03.g190950 No alias tubulin alpha-2 chain 0.02 Orthogroups_2024-Update
Cre04.g216850 No alias tubulin alpha-2 chain 0.02 Orthogroups_2024-Update
Kfl00215_0160 kfl00215_0160_v1.1 (q6vaf9|tba4_goshi : 828.0) Tubulin alpha-4 chain... 0.02 Orthogroups_2024-Update
PSME_00010571-RA No alias (q6vaf9|tba4_goshi : 834.0) Tubulin alpha-4 chain... 0.03 Orthogroups_2024-Update
Pp1s70_210V6 No alias alpha tubulin 1 0.03 Orthogroups_2024-Update
Sopen00g003710 No alias Tubulin/FtsZ family, GTPase domain 0.02 Orthogroups_2024-Update
evm.model.tig00000404.34 No alias (q9zrj4|tba_chlvu : 793.0) Tubulin alpha chain -... 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003924 GTPase activity IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEP Predicted GO
MF GO:0004602 glutathione peroxidase activity IEP Predicted GO
BP GO:0005975 carbohydrate metabolic process IEP Predicted GO
BP GO:0005976 polysaccharide metabolic process IEP Predicted GO
BP GO:0006073 cellular glucan metabolic process IEP Predicted GO
BP GO:0006275 regulation of DNA replication IEP Predicted GO
BP GO:0006333 chromatin assembly or disassembly IEP Predicted GO
MF GO:0016798 hydrolase activity, acting on glycosyl bonds IEP Predicted GO
BP GO:0044042 glucan metabolic process IEP Predicted GO
BP GO:0044262 cellular carbohydrate metabolic process IEP Predicted GO
BP GO:0044264 cellular polysaccharide metabolic process IEP Predicted GO
MF GO:0046527 glucosyltransferase activity IEP Predicted GO
BP GO:0051052 regulation of DNA metabolic process IEP Predicted GO
InterPro domains Description Start Stop
IPR003008 Tubulin_FtsZ_GTPase 3 213
IPR018316 Tubulin/FtsZ_2-layer-sand-dom 263 392
No external refs found!