Description : (at4g13650 : 669.0) Pentatricopeptide repeat (PPR) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT1G16480.1); Has 61118 Blast hits to 14026 proteins in 284 species: Archae - 2; Bacteria - 18; Metazoa - 154; Fungi - 167; Plants - 59907; Viruses - 0; Other Eukaryotes - 870 (source: NCBI BLink). & (q76c99|rf1_orysa : 137.0) Rf1 protein, mitochondrial precursor (PPR protein) (Fertility restorer) (Restorer for CMS) - Oryza sativa (Rice) & (reliability: 1338.0) & (original description: no original description)
Gene families : OG_42_0000001 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | Picea release: MA_9360929g0010 | |
Cluster | HCCA clusters: Cluster_6 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
123450 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.03 | Orthogroups_2024-Update | |
126194 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.04 | Orthogroups_2024-Update | |
Bradi1g68870 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.03 | Orthogroups_2024-Update | |
Bradi1g72290 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.03 | Orthogroups_2024-Update | |
Bradi2g04723 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.02 | Orthogroups_2024-Update | |
Bradi2g09441 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.02 | Orthogroups_2024-Update | |
Bradi2g22840 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.02 | Orthogroups_2024-Update | |
Bradi3g36470 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.03 | Orthogroups_2024-Update | |
Bradi3g40080 | No alias | mitochondrial editing factor 19 | 0.02 | Orthogroups_2024-Update | |
Bradi4g20810 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.03 | Orthogroups_2024-Update | |
Bradi5g14000 | No alias | Pentatricopeptide repeat (PPR-like) superfamily protein | 0.02 | Orthogroups_2024-Update | |
Glyma.12G183600 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.03 | Orthogroups_2024-Update | |
Glyma.15G273200 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.03 | Orthogroups_2024-Update | |
Glyma.20G155800 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.04 | Orthogroups_2024-Update | |
HORVU5Hr1G047290.1 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
LOC_Os01g72930 | No alias | pentatricopeptide, putative, expressed | 0.02 | Orthogroups_2024-Update | |
LOC_Os04g43430 | No alias | pentatricopeptide, putative, expressed | 0.04 | Orthogroups_2024-Update | |
LOC_Os09g24640 | No alias | pentatricopeptide, putative, expressed | 0.02 | Orthogroups_2024-Update | |
LOC_Os12g36620 | No alias | pentatricopeptide, putative, expressed | 0.03 | Orthogroups_2024-Update | |
Potri.001G075800 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.02 | Orthogroups_2024-Update | |
Potri.005G019400 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.03 | Orthogroups_2024-Update | |
Pp1s48_253V6 | No alias | hypothetical protein [Oryza sativa (japonica cultivar-group)] | 0.03 | Orthogroups_2024-Update | |
Seita.1G205700.1 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
Seita.1G290500.1 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
Seita.2G031700.1 | No alias | Unknown function | 0.04 | Orthogroups_2024-Update | |
Seita.4G225800.1 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
Seita.5G243300.1 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
Seita.7G205600.1 | No alias | Unknown function | 0.02 | Orthogroups_2024-Update | |
Sobic.008G147400.2 | No alias | Unknown function | 0.04 | Orthogroups_2024-Update | |
Solyc01g081110 | No alias | Pentatricopeptide repeat-containing protein (AHRD V3.3... | 0.02 | Orthogroups_2024-Update | |
Solyc03g114660 | No alias | Pentatricopeptide repeat-containing protein (AHRD V3.3... | 0.03 | Orthogroups_2024-Update | |
Solyc06g076900 | No alias | Pentatricopeptide repeat-containing family protein (AHRD... | 0.02 | Orthogroups_2024-Update | |
Solyc11g064750 | No alias | Pentatricopeptide repeat-containing family protein (AHRD... | 0.02 | Orthogroups_2024-Update | |
Sopen06g035950 | No alias | PPR repeat family | 0.03 | Orthogroups_2024-Update | |
Sopen09g031050 | No alias | PPR repeat | 0.02 | Orthogroups_2024-Update |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0008270 | zinc ion binding | IEA | InterProScan predictions |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0001871 | pattern binding | IEP | Predicted GO |
MF | GO:0003723 | RNA binding | IEP | Predicted GO |
MF | GO:0016627 | oxidoreductase activity, acting on the CH-CH group of donors | IEP | Predicted GO |
MF | GO:0016636 | oxidoreductase activity, acting on the CH-CH group of donors, iron-sulfur protein as acceptor | IEP | Predicted GO |
MF | GO:0016741 | transferase activity, transferring one-carbon groups | IEP | Predicted GO |
MF | GO:0016742 | hydroxymethyl-, formyl- and related transferase activity | IEP | Predicted GO |
MF | GO:0030247 | polysaccharide binding | IEP | Predicted GO |
MF | GO:0051743 | red chlorophyll catabolite reductase activity | IEP | Predicted GO |
MF | GO:2001070 | starch binding | IEP | Predicted GO |
InterPro domains | Description | Start | Stop |
---|---|---|---|
IPR032867 | DYW_dom | 837 | 961 |
IPR002885 | Pentatricopeptide_repeat | 664 | 710 |
IPR002885 | Pentatricopeptide_repeat | 327 | 374 |
IPR002885 | Pentatricopeptide_repeat | 225 | 273 |
IPR002885 | Pentatricopeptide_repeat | 125 | 171 |
IPR002885 | Pentatricopeptide_repeat | 563 | 611 |
IPR002885 | Pentatricopeptide_repeat | 402 | 428 |
IPR002885 | Pentatricopeptide_repeat | 506 | 530 |
IPR002885 | Pentatricopeptide_repeat | 534 | 562 |
No external refs found! |