Description : (at5g03240 : 515.0) encodes ubiquitin that is attached to proteins destined for degradation. UBQ3 is most homologous with UBQ4, and is expressed in higher levels in vegetative tissue but lower levels in flowers than UBQ4. UBQ3 encodes different number of ubiquitins in different ecotypes. UBQ3 transcript level is modulated by UV-B and light/dark treatments.; polyubiquitin 3 (UBQ3); INVOLVED IN: protein modification process, response to UV-B, response to light stimulus, ubiquitin-dependent protein catabolic process; LOCATED IN: intracellular, vacuole; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ubiquitin subgroup (InterPro:IPR019956), Ubiquitin conserved site (InterPro:IPR019954), Ubiquitin (InterPro:IPR000626), Ubiquitin supergroup (InterPro:IPR019955); BEST Arabidopsis thaliana protein match is: ubiquitin 4 (TAIR:AT5G20620.1); Has 26684 Blast hits to 7218 proteins in 726 species: Archae - 0; Bacteria - 80; Metazoa - 12490; Fungi - 3021; Plants - 5505; Viruses - 651; Other Eukaryotes - 4937 (source: NCBI BLink). & (p69326|ubiq_wheat : 150.0) Ubiquitin - Triticum aestivum (Wheat) & (reliability: 1030.0) & (original description: no original description)
Gene families : OG_42_0000048 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000048_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | Picea release: MA_94077g0010 | |
Cluster | HCCA clusters: Cluster_194 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
271198 | No alias | polyubiquitin 10 | 0.03 | Orthogroups_2024-Update | |
271419 | No alias | polyubiquitin 10 | 0.02 | Orthogroups_2024-Update | |
Bradi1g32700 | No alias | polyubiquitin 10 | 0.03 | Orthogroups_2024-Update | |
Kfl00013_0170 | kfl00013_0170_v1.... | (at5g03240 : 108.0) encodes ubiquitin that is attached... | 0.02 | Orthogroups_2024-Update | |
Kfl00272_g6 | kfl00272_g6_v1.1 | (at4g05320 : 751.0) One of five polyubiquitin genes in... | 0.03 | Orthogroups_2024-Update | |
LOC_Os04g53620 | No alias | ubiquitin family protein, putative, expressed | 0.02 | Orthogroups_2024-Update | |
Potri.004G021500 | No alias | polyubiquitin 10 | 0.03 | Orthogroups_2024-Update | |
Potri.006G129600 | No alias | ubiquitin 4 | 0.03 | Orthogroups_2024-Update | |
Potri.011G134200 | No alias | polyubiquitin 10 | 0.03 | Orthogroups_2024-Update | |
Pp1s100_236V6 | No alias | T8F5.13; polyubiquitin, putative [Arabidopsis thaliana] | 0.03 | Orthogroups_2024-Update | |
Seita.3G398300.1 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
Seita.4G253400.1 | No alias | UBQ ubiquitin-fold protein | 0.03 | Orthogroups_2024-Update | |
Seita.5G081000.1 | No alias | UBQ ubiquitin-fold protein | 0.04 | Orthogroups_2024-Update |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0005515 | protein binding | IEA | InterProScan predictions |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
BP | GO:0000375 | RNA splicing, via transesterification reactions | IEP | Predicted GO |
BP | GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | IEP | Predicted GO |
BP | GO:0000398 | mRNA splicing, via spliceosome | IEP | Predicted GO |
MF | GO:0003682 | chromatin binding | IEP | Predicted GO |
MF | GO:0003700 | DNA-binding transcription factor activity | IEP | Predicted GO |
MF | GO:0004527 | exonuclease activity | IEP | Predicted GO |
MF | GO:0005096 | GTPase activator activity | IEP | Predicted GO |
MF | GO:0005524 | ATP binding | IEP | Predicted GO |
CC | GO:0005681 | spliceosomal complex | IEP | Predicted GO |
BP | GO:0005991 | trehalose metabolic process | IEP | Predicted GO |
BP | GO:0005992 | trehalose biosynthetic process | IEP | Predicted GO |
MF | GO:0008047 | enzyme activator activity | IEP | Predicted GO |
MF | GO:0008144 | drug binding | IEP | Predicted GO |
MF | GO:0008324 | cation transmembrane transporter activity | IEP | Predicted GO |
BP | GO:0008380 | RNA splicing | IEP | Predicted GO |
MF | GO:0008408 | 3'-5' exonuclease activity | IEP | Predicted GO |
BP | GO:0009116 | nucleoside metabolic process | IEP | Predicted GO |
BP | GO:0009119 | ribonucleoside metabolic process | IEP | Predicted GO |
BP | GO:0009312 | oligosaccharide biosynthetic process | IEP | Predicted GO |
BP | GO:0015969 | guanosine tetraphosphate metabolic process | IEP | Predicted GO |
MF | GO:0017076 | purine nucleotide binding | IEP | Predicted GO |
MF | GO:0022890 | inorganic cation transmembrane transporter activity | IEP | Predicted GO |
MF | GO:0032553 | ribonucleotide binding | IEP | Predicted GO |
MF | GO:0032555 | purine ribonucleotide binding | IEP | Predicted GO |
BP | GO:0033865 | nucleoside bisphosphate metabolic process | IEP | Predicted GO |
BP | GO:0033875 | ribonucleoside bisphosphate metabolic process | IEP | Predicted GO |
MF | GO:0033926 | glycopeptide alpha-N-acetylgalactosaminidase activity | IEP | Predicted GO |
BP | GO:0034032 | purine nucleoside bisphosphate metabolic process | IEP | Predicted GO |
BP | GO:0034035 | purine ribonucleoside bisphosphate metabolic process | IEP | Predicted GO |
MF | GO:0035639 | purine ribonucleoside triphosphate binding | IEP | Predicted GO |
BP | GO:0042278 | purine nucleoside metabolic process | IEP | Predicted GO |
MF | GO:0043565 | sequence-specific DNA binding | IEP | Predicted GO |
BP | GO:0046128 | purine ribonucleoside metabolic process | IEP | Predicted GO |
BP | GO:0046351 | disaccharide biosynthetic process | IEP | Predicted GO |
MF | GO:0046873 | metal ion transmembrane transporter activity | IEP | Predicted GO |
MF | GO:0097367 | carbohydrate derivative binding | IEP | Predicted GO |
MF | GO:0140103 | catalytic activity, acting on a glycoprotein | IEP | Predicted GO |
MF | GO:0140110 | transcription regulator activity | IEP | Predicted GO |
BP | GO:1901068 | guanosine-containing compound metabolic process | IEP | Predicted GO |
BP | GO:1901657 | glycosyl compound metabolic process | IEP | Predicted GO |
No external refs found! |