1. Home
  2. Species
  3. Picea abies
  4. Sequence
  5. MA_9420337g0010

MA_9420337g0010


Description : (at5g03240 : 357.0) encodes ubiquitin that is attached to proteins destined for degradation. UBQ3 is most homologous with UBQ4, and is expressed in higher levels in vegetative tissue but lower levels in flowers than UBQ4. UBQ3 encodes different number of ubiquitins in different ecotypes. UBQ3 transcript level is modulated by UV-B and light/dark treatments.; polyubiquitin 3 (UBQ3); INVOLVED IN: protein modification process, response to UV-B, response to light stimulus, ubiquitin-dependent protein catabolic process; LOCATED IN: intracellular, vacuole; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ubiquitin subgroup (InterPro:IPR019956), Ubiquitin conserved site (InterPro:IPR019954), Ubiquitin (InterPro:IPR000626), Ubiquitin supergroup (InterPro:IPR019955); BEST Arabidopsis thaliana protein match is: ubiquitin 4 (TAIR:AT5G20620.1); Has 26684 Blast hits to 7218 proteins in 726 species: Archae - 0; Bacteria - 80; Metazoa - 12490; Fungi - 3021; Plants - 5505; Viruses - 651; Other Eukaryotes - 4937 (source: NCBI BLink). & (p69326|ubiq_wheat : 150.0) Ubiquitin - Triticum aestivum (Wheat) & (reliability: 714.0) & (original description: no original description)


Gene families : OG_42_0000048 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000048_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Picea release: MA_9420337g0010
Cluster HCCA clusters: Cluster_13

Target Alias Description ECC score Gene Family Method Actions
163447 No alias ubiquitin 4 0.02 Orthogroups_2024-Update
173723 No alias polyubiquitin 10 0.03 Orthogroups_2024-Update
228943 No alias polyubiquitin 10 0.02 Orthogroups_2024-Update
Bradi1g32700 No alias polyubiquitin 10 0.03 Orthogroups_2024-Update
Cre09.g396400 No alias related to ubiquitin 1 0.02 Orthogroups_2024-Update
GRMZM2G419891 No alias polyubiquitin 10 0.02 Orthogroups_2024-Update
Glyma.13G138600 No alias ubiquitin 4 0.05 Orthogroups_2024-Update
Kfl00325_0060 kfl00325_0060_v1.1 (at5g42220 : 100.0) Ubiquitin-like superfamily protein;... 0.03 Orthogroups_2024-Update
Pp1s351_6V6 No alias polyubiquitin containing 7 ubiquitin monomers 0.02 Orthogroups_2024-Update
Sobic.002G178700.2 No alias Unknown function 0.02 Orthogroups_2024-Update
Sobic.002G292500.1 No alias component *(eL40) of large ribosomal-subunit (LSU) proteome 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA InterProScan predictions
Toggle parental
Type GO Term Name Evidence Source
MF GO:0001671 ATPase activator activity IEP Predicted GO
BP GO:0006457 protein folding IEP Predicted GO
MF GO:0008047 enzyme activator activity IEP Predicted GO
MF GO:0008234 cysteine-type peptidase activity IEP Predicted GO
MF GO:0051082 unfolded protein binding IEP Predicted GO
MF GO:0051087 chaperone binding IEP Predicted GO
MF GO:0060590 ATPase regulator activity IEP Predicted GO
InterPro domains Description Start Stop
IPR000626 Ubiquitin_dom 3 74
IPR000626 Ubiquitin_dom 155 185
IPR000626 Ubiquitin_dom 79 150
No external refs found!