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Description : RING/U-box superfamily protein (AHRD V3.3 *** AT1G49230.1)
Gene families : OG_42_0000003 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | Solanum release: Solyc11g005320 | |
| Cluster | HCCA clusters: Cluster_165 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| A4A49_18116 | No alias | ring-h2 finger protein atl78 | 0.02 | Orthogroups_2024-Update | |
| At1g49210 | No alias | E3 ubiquitin-protein ligase ATL76... | 0.05 | Orthogroups_2024-Update | |
| Bradi3g32215 | No alias | RING/U-box superfamily protein | 0.03 | Orthogroups_2024-Update | |
| Bradi3g45890 | No alias | RING/U-box superfamily protein | 0.04 | Orthogroups_2024-Update | |
| Bradi3g51600 | No alias | TOXICOS EN LEVADURA 2 | 0.03 | Orthogroups_2024-Update | |
| Brara.A03044.1 | No alias | RING-H2-class ATL-subclass E3 ubiquitin ligase | 0.02 | Orthogroups_2024-Update | |
| Brara.A03045.1 | No alias | RING-H2-class ATL-subclass E3 ubiquitin ligase | 0.03 | Orthogroups_2024-Update | |
| Cre07.g350867 | No alias | RING/U-box superfamily protein | 0.02 | Orthogroups_2024-Update | |
| GRMZM2G409372 | No alias | RING/U-box superfamily protein | 0.03 | Orthogroups_2024-Update | |
| Glyma.02G194400 | No alias | RING/U-box superfamily protein | 0.02 | Orthogroups_2024-Update | |
| Glyma.14G178400 | No alias | RING/U-box superfamily protein | 0.03 | Orthogroups_2024-Update | |
| Glyma.18G014600 | No alias | RING/U-box superfamily protein | 0.04 | Orthogroups_2024-Update | |
| HORVU2Hr1G094840.1 | No alias | RING-H2-class ATL-subclass E3 ubiquitin ligase | 0.03 | Orthogroups_2024-Update | |
| HORVU4Hr1G080840.1 | No alias | RING-H2-class ATL-subclass E3 ubiquitin ligase | 0.02 | Orthogroups_2024-Update | |
| HORVU5Hr1G016710.1 | No alias | RING-H2-class ATL-subclass E3 ubiquitin ligase | 0.03 | Orthogroups_2024-Update | |
| HORVU5Hr1G069990.3 | No alias | RING-H2-class ATL-subclass E3 ubiquitin ligase | 0.03 | Orthogroups_2024-Update | |
| LOC_Os12g24530 | No alias | zinc finger, C3HC4 type domain containing protein, expressed | 0.02 | Orthogroups_2024-Update | |
| MA_2679g0010 | No alias | (at3g16720 : 111.0) RING-H2 protein induced after... | 0.02 | Orthogroups_2024-Update | |
| MA_308999g0010 | No alias | (at1g72310 : 80.9) Encodes a putative RING-H2 zinc... | 0.05 | Orthogroups_2024-Update | |
| MA_37578g0010 | No alias | no hits & (original description: no original description) | 0.02 | Orthogroups_2024-Update | |
| MA_41514g0010 | No alias | (at5g01880 : 91.3) RING/U-box superfamily protein;... | 0.02 | Orthogroups_2024-Update | |
| MA_81046g0010 | No alias | (at1g49230 : 127.0) RING/U-box superfamily protein;... | 0.02 | Orthogroups_2024-Update | |
| Potri.003G075200 | No alias | RING/U-box superfamily protein | 0.03 | Orthogroups_2024-Update | |
| Potri.006G201500 | No alias | RING/U-box superfamily protein | 0.02 | Orthogroups_2024-Update | |
| Potri.007G057300 | No alias | RING-H2 finger A3A | 0.02 | Orthogroups_2024-Update | |
| Potri.010G243300 | No alias | RING/U-box superfamily protein | 0.03 | Orthogroups_2024-Update | |
| Potri.019G010600 | No alias | RING/U-box superfamily protein | 0.02 | Orthogroups_2024-Update | |
| Seita.3G272800.1 | No alias | RING-H2-class ATL-subclass E3 ubiquitin ligase | 0.04 | Orthogroups_2024-Update | |
| Sobic.003G339400.1 | No alias | Unknown function | 0.02 | Orthogroups_2024-Update | |
| Solyc02g086950 | No alias | LOW QUALITY:RING/U-box superfamily protein, putative... | 0.03 | Orthogroups_2024-Update | |
| Solyc04g074820 | No alias | RING/U-box superfamily protein, putative (AHRD V3.3 ***... | 0.04 | Orthogroups_2024-Update | |
| Sopen10g005280 | No alias | Ring finger domain | 0.02 | Orthogroups_2024-Update | |
| Sopen11g001300 | No alias | Ring finger domain | 0.03 | Orthogroups_2024-Update | |
| Sopen11g001310 | No alias | Ring finger domain | 0.04 | Orthogroups_2024-Update |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0005515 | protein binding | IEA | InterProScan predictions |
| MF | GO:0008270 | zinc ion binding | IEA | InterProScan predictions |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003700 | DNA-binding transcription factor activity | IEP | Predicted GO |
| MF | GO:0004019 | adenylosuccinate synthase activity | IEP | Predicted GO |
| CC | GO:0005634 | nucleus | IEP | Predicted GO |
| BP | GO:0008612 | peptidyl-lysine modification to peptidyl-hypusine | IEP | Predicted GO |
| BP | GO:0009058 | biosynthetic process | IEP | Predicted GO |
| MF | GO:0016879 | ligase activity, forming carbon-nitrogen bonds | IEP | Predicted GO |
| BP | GO:0018193 | peptidyl-amino acid modification | IEP | Predicted GO |
| BP | GO:0018205 | peptidyl-lysine modification | IEP | Predicted GO |
| CC | GO:0043226 | organelle | IEP | Predicted GO |
| CC | GO:0043227 | membrane-bounded organelle | IEP | Predicted GO |
| CC | GO:0043229 | intracellular organelle | IEP | Predicted GO |
| CC | GO:0043231 | intracellular membrane-bounded organelle | IEP | Predicted GO |
| MF | GO:0046983 | protein dimerization activity | IEP | Predicted GO |
| BP | GO:0051604 | protein maturation | IEP | Predicted GO |
| MF | GO:0140110 | transcription regulator activity | IEP | Predicted GO |
| BP | GO:1901566 | organonitrogen compound biosynthetic process | IEP | Predicted GO |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR001841 | Znf_RING | 127 | 170 |
| No external refs found! |