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  5. MA_953793g0020

MA_953793g0020


Description : (at4g18750 : 600.0) Encodes a pentatricopeptide (PPR) protein involved in leaf and root development. dot4 mutants have an aberrant midgap venation pattern in juvenile leaves and cotyledons.; DEFECTIVELY ORGANIZED TRIBUTARIES 4 (DOT4); INVOLVED IN: cotyledon vascular tissue pattern formation, phloem or xylem histogenesis, leaf vascular tissue pattern formation, leaf development; LOCATED IN: chloroplast; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT5G16860.1); Has 49728 Blast hits to 14531 proteins in 279 species: Archae - 0; Bacteria - 13; Metazoa - 210; Fungi - 140; Plants - 48642; Viruses - 0; Other Eukaryotes - 723 (source: NCBI BLink). & (q76c99|rf1_orysa : 140.0) Rf1 protein, mitochondrial precursor (PPR protein) (Fertility restorer) (Restorer for CMS) - Oryza sativa (Rice) & (reliability: 1200.0) & (original description: no original description)


Gene families : OG_42_0000001 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Picea release: MA_953793g0020
Cluster HCCA clusters: Cluster_7

Target Alias Description ECC score Gene Family Method Actions
45004 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Orthogroups_2024-Update
Bradi1g36900 No alias Pentatricopeptide repeat (PPR-like) superfamily protein 0.02 Orthogroups_2024-Update
Bradi2g55230 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Orthogroups_2024-Update
Bradi3g48960 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
Glyma.12G183600 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
PSME_00000079-RA No alias (at4g18750 : 635.0) Encodes a pentatricopeptide (PPR)... 0.03 Orthogroups_2024-Update
PSME_00000162-RA No alias (at2g27610 : 616.0) Tetratricopeptide repeat (TPR)-like... 0.05 Orthogroups_2024-Update
PSME_00001341-RA No alias (at1g20230 : 694.0) Pentatricopeptide repeat (PPR)... 0.06 Orthogroups_2024-Update
PSME_00001942-RA No alias (at3g57430 : 689.0) Encodes a chloroplast RNA editing... 0.07 Orthogroups_2024-Update
PSME_00002349-RA No alias (at3g12770 : 612.0) Encodes a pentatricopeptide repeat... 0.06 Orthogroups_2024-Update
PSME_00004138-RA No alias (at1g11290 : 633.0) Pentatricopeptide Repeat Protein... 0.03 Orthogroups_2024-Update
PSME_00007652-RA No alias (at1g11290 : 614.0) Pentatricopeptide Repeat Protein... 0.06 Orthogroups_2024-Update
PSME_00008064-RA No alias (at3g49170 : 637.0) embryo defective 2261 (EMB2261);... 0.05 Orthogroups_2024-Update
PSME_00008509-RA No alias (at1g11290 : 604.0) Pentatricopeptide Repeat Protein... 0.05 Orthogroups_2024-Update
PSME_00008750-RA No alias (at1g15510 : 464.0) Encodes a pentatricopeptide repeat... 0.04 Orthogroups_2024-Update
PSME_00010400-RA No alias (at4g02750 : 490.0) Tetratricopeptide repeat (TPR)-like... 0.02 Orthogroups_2024-Update
PSME_00010401-RA No alias (at4g18750 : 645.0) Encodes a pentatricopeptide (PPR)... 0.04 Orthogroups_2024-Update
PSME_00010951-RA No alias (at1g11290 : 537.0) Pentatricopeptide Repeat Protein... 0.04 Orthogroups_2024-Update
PSME_00011508-RA No alias (at2g27610 : 744.0) Tetratricopeptide repeat (TPR)-like... 0.05 Orthogroups_2024-Update
PSME_00012885-RA No alias (at1g08070 : 603.0) Encodes a chloroplast RNA editing... 0.03 Orthogroups_2024-Update
PSME_00013106-RA No alias (at4g13650 : 681.0) Pentatricopeptide repeat (PPR)... 0.04 Orthogroups_2024-Update
PSME_00016247-RA No alias (at3g12770 : 627.0) Encodes a pentatricopeptide repeat... 0.06 Orthogroups_2024-Update
PSME_00016248-RA No alias (at3g12770 : 631.0) Encodes a pentatricopeptide repeat... 0.05 Orthogroups_2024-Update
PSME_00016831-RA No alias (at3g12770 : 618.0) Encodes a pentatricopeptide repeat... 0.05 Orthogroups_2024-Update
PSME_00016832-RA No alias (at4g18750 : 587.0) Encodes a pentatricopeptide (PPR)... 0.04 Orthogroups_2024-Update
PSME_00018598-RA No alias (at1g11290 : 726.0) Pentatricopeptide Repeat Protein... 0.03 Orthogroups_2024-Update
PSME_00020178-RA No alias (at3g03580 : 731.0) Tetratricopeptide repeat (TPR)-like... 0.03 Orthogroups_2024-Update
PSME_00021735-RA No alias (at4g33170 : 600.0) Tetratricopeptide repeat (TPR)-like... 0.05 Orthogroups_2024-Update
PSME_00021884-RA No alias (at2g27610 : 613.0) Tetratricopeptide repeat (TPR)-like... 0.04 Orthogroups_2024-Update
PSME_00024026-RA No alias (at4g20770 : 565.0) Pentatricopeptide repeat (PPR)... 0.04 Orthogroups_2024-Update
PSME_00025365-RA No alias (at3g49170 : 602.0) embryo defective 2261 (EMB2261);... 0.04 Orthogroups_2024-Update
PSME_00026228-RA No alias (at3g57430 : 606.0) Encodes a chloroplast RNA editing... 0.03 Orthogroups_2024-Update
PSME_00028969-RA No alias (at4g13650 : 580.0) Pentatricopeptide repeat (PPR)... 0.04 Orthogroups_2024-Update
PSME_00029481-RA No alias (at4g18750 : 670.0) Encodes a pentatricopeptide (PPR)... 0.03 Orthogroups_2024-Update
PSME_00030552-RA No alias (at4g18750 : 502.0) Encodes a pentatricopeptide (PPR)... 0.05 Orthogroups_2024-Update
PSME_00031833-RA No alias (at3g13770 : 501.0) Pentatricopeptide repeat (PPR)... 0.06 Orthogroups_2024-Update
PSME_00032004-RA No alias (at1g19720 : 530.0) Pentatricopeptide repeat (PPR-like)... 0.05 Orthogroups_2024-Update
PSME_00033965-RA No alias (at2g27610 : 573.0) Tetratricopeptide repeat (TPR)-like... 0.04 Orthogroups_2024-Update
PSME_00034005-RA No alias (at3g23330 : 585.0) Tetratricopeptide repeat (TPR)-like... 0.05 Orthogroups_2024-Update
PSME_00035769-RA No alias (at4g13650 : 702.0) Pentatricopeptide repeat (PPR)... 0.08 Orthogroups_2024-Update
PSME_00036495-RA No alias (at1g11290 : 559.0) Pentatricopeptide Repeat Protein... 0.03 Orthogroups_2024-Update
PSME_00039409-RA No alias (at4g18750 : 537.0) Encodes a pentatricopeptide (PPR)... 0.05 Orthogroups_2024-Update
PSME_00039410-RA No alias (at2g13600 : 502.0) Pentatricopeptide repeat (PPR)... 0.04 Orthogroups_2024-Update
PSME_00039504-RA No alias (at4g13650 : 612.0) Pentatricopeptide repeat (PPR)... 0.03 Orthogroups_2024-Update
PSME_00041541-RA No alias (at3g12770 : 598.0) Encodes a pentatricopeptide repeat... 0.05 Orthogroups_2024-Update
PSME_00042924-RA No alias (at3g57430 : 662.0) Encodes a chloroplast RNA editing... 0.05 Orthogroups_2024-Update
PSME_00047047-RA No alias (at1g11290 : 654.0) Pentatricopeptide Repeat Protein... 0.03 Orthogroups_2024-Update
PSME_00048055-RA No alias (at4g13650 : 598.0) Pentatricopeptide repeat (PPR)... 0.02 Orthogroups_2024-Update
PSME_00048766-RA No alias (at4g02750 : 577.0) Tetratricopeptide repeat (TPR)-like... 0.02 Orthogroups_2024-Update
PSME_00051353-RA No alias (at4g13650 : 695.0) Pentatricopeptide repeat (PPR)... 0.04 Orthogroups_2024-Update
PSME_00051698-RA No alias (at3g57430 : 715.0) Encodes a chloroplast RNA editing... 0.03 Orthogroups_2024-Update
PSME_00056168-RA No alias (at3g61170 : 686.0) Tetratricopeptide repeat (TPR)-like... 0.05 Orthogroups_2024-Update
PSME_00056424-RA No alias (at2g22070 : 461.0) pentatricopeptide (PPR)... 0.03 Orthogroups_2024-Update
PSME_00056594-RA No alias (at3g53360 : 383.0) Tetratricopeptide repeat (TPR)-like... 0.03 Orthogroups_2024-Update
PSME_00056843-RA No alias (at4g02750 : 457.0) Tetratricopeptide repeat (TPR)-like... 0.06 Orthogroups_2024-Update
PSME_00056965-RA No alias (at4g39530 : 592.0) Tetratricopeptide repeat (TPR)-like... 0.04 Orthogroups_2024-Update
PSME_00057046-RA No alias (at4g18750 : 592.0) Encodes a pentatricopeptide (PPR)... 0.05 Orthogroups_2024-Update
PSME_00057114-RA No alias (at4g21300 : 528.0) Tetratricopeptide repeat (TPR)-like... 0.07 Orthogroups_2024-Update
Potri.001G217600 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Orthogroups_2024-Update
Pp1s169_110V6 No alias T12J13.14; pentatricopeptide (PPR) repeat-containing... 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP Predicted GO
MF GO:0004611 phosphoenolpyruvate carboxykinase activity IEP Predicted GO
MF GO:0005488 binding IEP Predicted GO
BP GO:0006099 tricarboxylic acid cycle IEP Predicted GO
BP GO:0006101 citrate metabolic process IEP Predicted GO
MF GO:0008270 zinc ion binding IEP Predicted GO
MF GO:0008964 phosphoenolpyruvate carboxylase activity IEP Predicted GO
BP GO:0015977 carbon fixation IEP Predicted GO
BP GO:0016999 antibiotic metabolic process IEP Predicted GO
MF GO:0043167 ion binding IEP Predicted GO
MF GO:0043169 cation binding IEP Predicted GO
MF GO:0046872 metal ion binding IEP Predicted GO
MF GO:0046914 transition metal ion binding IEP Predicted GO
BP GO:0072350 tricarboxylic acid metabolic process IEP Predicted GO
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 289 310
IPR002885 Pentatricopeptide_repeat 390 415
IPR002885 Pentatricopeptide_repeat 591 614
IPR002885 Pentatricopeptide_repeat 315 362
IPR002885 Pentatricopeptide_repeat 515 562
IPR002885 Pentatricopeptide_repeat 416 461
IPR002885 Pentatricopeptide_repeat 110 160
IPR002885 Pentatricopeptide_repeat 214 262
No external refs found!