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  5. MA_959553g0010

MA_959553g0010


Description : (at3g22470 : 392.0) Pentatricopeptide repeat (PPR) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT1G12300.1); Has 71386 Blast hits to 15586 proteins in 313 species: Archae - 4; Bacteria - 76; Metazoa - 1075; Fungi - 1368; Plants - 66381; Viruses - 0; Other Eukaryotes - 2482 (source: NCBI BLink). & (q76c99|rf1_orysa : 372.0) Rf1 protein, mitochondrial precursor (PPR protein) (Fertility restorer) (Restorer for CMS) - Oryza sativa (Rice) & (reliability: 736.0) & (original description: no original description)


Gene families : OG_42_0001385 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001385_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Picea release: MA_959553g0010
Cluster HCCA clusters: Cluster_227

Target Alias Description ECC score Gene Family Method Actions
441332 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
MA_373708g0010 No alias (at3g22470 : 283.0) Pentatricopeptide repeat (PPR)... 0.05 Orthogroups_2024-Update
MA_68479g0010 No alias (at1g62910 : 405.0) Pentatricopeptide repeat (PPR)... 0.04 Orthogroups_2024-Update
MA_78481g0010 No alias (at1g63130 : 360.0) Transacting siRNA generating locus.... 0.05 Orthogroups_2024-Update
PSME_00010606-RA No alias (at3g22470 : 287.0) Pentatricopeptide repeat (PPR)... 0.02 Orthogroups_2024-Update
PSME_00012029-RA No alias (at5g41170 : 136.0) Pentatricopeptide repeat (PPR-like)... 0.06 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0000159 protein phosphatase type 2A complex IEP Predicted GO
MF GO:0008270 zinc ion binding IEP Predicted GO
CC GO:0008287 protein serine/threonine phosphatase complex IEP Predicted GO
MF GO:0019208 phosphatase regulator activity IEP Predicted GO
MF GO:0019888 protein phosphatase regulator activity IEP Predicted GO
MF GO:0033926 glycopeptide alpha-N-acetylgalactosaminidase activity IEP Predicted GO
MF GO:0043167 ion binding IEP Predicted GO
MF GO:0043169 cation binding IEP Predicted GO
MF GO:0046872 metal ion binding IEP Predicted GO
MF GO:0046914 transition metal ion binding IEP Predicted GO
MF GO:0140103 catalytic activity, acting on a glycoprotein IEP Predicted GO
CC GO:1903293 phosphatase complex IEP Predicted GO
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 207 256
IPR002885 Pentatricopeptide_repeat 522 571
IPR002885 Pentatricopeptide_repeat 592 641
IPR002885 Pentatricopeptide_repeat 417 466
IPR002885 Pentatricopeptide_repeat 277 326
IPR002885 Pentatricopeptide_repeat 102 151
IPR002885 Pentatricopeptide_repeat 347 388
IPR002885 Pentatricopeptide_repeat 70 99
IPR002885 Pentatricopeptide_repeat 658 683
IPR002885 Pentatricopeptide_repeat 171 197
IPR002885 Pentatricopeptide_repeat 483 514
No external refs found!