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  5. MA_962403g0010

MA_962403g0010


Description : (at4g00220 : 164.0) Encodes a protein containing a LOB domain that is expressed in embryos, flower primordium and lateral floral organ boundaries. Overexpression is correlated with activation of STM and KNAT1 and down regulation of PIN1 and reduced auxin transport levels. Ectopic expression in plants results in premature termination of the shoot apical meristem and small, lobed leaves.; JAGGED LATERAL ORGANS (JLO); CONTAINS InterPro DOMAIN/s: Lateral organ boundaries, LOB (InterPro:IPR004883); BEST Arabidopsis thaliana protein match is: LOB domain-containing protein 18 (TAIR:AT2G45420.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (reliability: 328.0) & (original description: no original description)


Gene families : OG_42_0000426 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000426_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Picea release: MA_962403g0010
Cluster HCCA clusters: Cluster_9

Target Alias Description ECC score Gene Family Method Actions
Glyma.09G268700 No alias LOB domain-containing protein 18 0.03 Orthogroups_2024-Update
HORVU4Hr1G063160.1 No alias AS2/LOB-type transcription factor 0.04 Orthogroups_2024-Update
MA_101817g0010 No alias (at2g45420 : 191.0) LOB domain-containing protein 18... 0.03 Orthogroups_2024-Update
MA_126761g0010 No alias (at3g03760 : 191.0) LOB domain-containing protein 20... 0.04 Orthogroups_2024-Update
MA_86300g0010 No alias (at2g45420 : 182.0) LOB domain-containing protein 18... 0.06 Orthogroups_2024-Update
PSME_00010378-RA No alias no hits & (original description: no original description) 0.02 Orthogroups_2024-Update
PSME_00048849-RA No alias (at3g58190 : 104.0) This gene contains two... 0.02 Orthogroups_2024-Update
PSME_00054958-RA No alias (at2g45420 : 188.0) LOB domain-containing protein 18... 0.03 Orthogroups_2024-Update
Sobic.004G348800.1 No alias AS2/LOB-type transcription factor 0.03 Orthogroups_2024-Update
Solyc01g098220 No alias LOB domain-containing protein, putative (AHRD V3.3 ***... 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0005991 trehalose metabolic process IEP Predicted GO
BP GO:0005992 trehalose biosynthetic process IEP Predicted GO
BP GO:0008037 cell recognition IEP Predicted GO
MF GO:0008171 O-methyltransferase activity IEP Predicted GO
BP GO:0016051 carbohydrate biosynthetic process IEP Predicted GO
BP GO:0022414 reproductive process IEP Predicted GO
MF GO:0030151 molybdenum ion binding IEP Predicted GO
BP GO:0034637 cellular carbohydrate biosynthetic process IEP Predicted GO
BP GO:0042126 nitrate metabolic process IEP Predicted GO
BP GO:0042128 nitrate assimilation IEP Predicted GO
BP GO:0046351 disaccharide biosynthetic process IEP Predicted GO
BP GO:0048544 recognition of pollen IEP Predicted GO
BP GO:0071941 nitrogen cycle metabolic process IEP Predicted GO
BP GO:2001057 reactive nitrogen species metabolic process IEP Predicted GO
InterPro domains Description Start Stop
IPR004883 LOB 11 109
No external refs found!