1. Home
  2. Species
  3. Picea abies
  4. Sequence
  5. MA_97789g0010

MA_97789g0010


Description : (at3g26540 : 452.0) Tetratricopeptide repeat (TPR)-like superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT4G21300.1); Has 45842 Blast hits to 12891 proteins in 208 species: Archae - 0; Bacteria - 0; Metazoa - 81; Fungi - 71; Plants - 45205; Viruses - 0; Other Eukaryotes - 485 (source: NCBI BLink). & (q76c99|rf1_orysa : 135.0) Rf1 protein, mitochondrial precursor (PPR protein) (Fertility restorer) (Restorer for CMS) - Oryza sativa (Rice) & (reliability: 904.0) & (original description: no original description)


Gene families : OG_42_0000001 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Picea release: MA_97789g0010
Cluster HCCA clusters: Cluster_167

Target Alias Description ECC score Gene Family Method Actions
At1g06140 No alias Pentatricopeptide repeat-containing protein At1g06140,... 0.05 Orthogroups_2024-Update
At1g74600 No alias Pentatricopeptide repeat-containing protein At1g74600,... 0.04 Orthogroups_2024-Update
At3g46790 No alias Pentatricopeptide repeat-containing protein At3g46790,... 0.02 Orthogroups_2024-Update
At4g18750 No alias Pentatricopeptide repeat-containing protein DOT4,... 0.04 Orthogroups_2024-Update
At4g30700 No alias MEF29 [Source:UniProtKB/TrEMBL;Acc:A0A178UUW3] 0.07 Orthogroups_2024-Update
At4g37380 No alias Pentatricopeptide repeat-containing protein ELI1,... 0.05 Orthogroups_2024-Update
Bradi1g12697 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.08 Orthogroups_2024-Update
Bradi2g48635 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Orthogroups_2024-Update
Bradi3g32220 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Orthogroups_2024-Update
Brara.J02108.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Glyma.02G227300 No alias Pentatricopeptide repeat (PPR-like) superfamily protein 0.05 Orthogroups_2024-Update
Glyma.05G078900 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
Glyma.10G277600 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
Glyma.12G001100 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
Glyma.14G224400 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
Glyma.15G093800 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.04 Orthogroups_2024-Update
Glyma.16G161800 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
HORVU3Hr1G073540.14 No alias Unknown function 0.03 Orthogroups_2024-Update
MA_10429069g0010 No alias (at4g18750 : 575.0) Encodes a pentatricopeptide (PPR)... 0.06 Orthogroups_2024-Update
MA_68707g0010 No alias (at3g24000 : 546.0) Tetratricopeptide repeat (TPR)-like... 0.1 Orthogroups_2024-Update
MA_7907g0020 No alias (at3g57430 : 717.0) Encodes a chloroplast RNA editing... 0.04 Orthogroups_2024-Update
MA_79738g0010 No alias (at3g13770 : 512.0) Pentatricopeptide repeat (PPR)... 0.04 Orthogroups_2024-Update
PSME_00009521-RA No alias (at4g18750 : 696.0) Encodes a pentatricopeptide (PPR)... 0.04 Orthogroups_2024-Update
PSME_00010760-RA No alias (at4g18750 : 196.0) Encodes a pentatricopeptide (PPR)... 0.04 Orthogroups_2024-Update
PSME_00010951-RA No alias (at1g11290 : 537.0) Pentatricopeptide Repeat Protein... 0.04 Orthogroups_2024-Update
PSME_00056663-RA No alias (at3g13770 : 545.0) Pentatricopeptide repeat (PPR)... 0.03 Orthogroups_2024-Update
Potri.001G466066 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
Potri.015G138000 No alias Pentatricopeptide repeat (PPR-like) superfamily protein 0.06 Orthogroups_2024-Update
Seita.1G237400.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Seita.4G090100.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Seita.5G124400.1 No alias RNA editing factor *(OTP81) 0.04 Orthogroups_2024-Update
Seita.5G326600.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Seita.7G164600.1 No alias RNA editing factor *(MEF12) 0.02 Orthogroups_2024-Update
Seita.9G068200.1 No alias RNA editing factor *(DEK36) 0.03 Orthogroups_2024-Update
Solyc07g009220 No alias Pentatricopeptide repeat-containing family protein (AHRD... 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0005488 binding IEP Predicted GO
MF GO:0008270 zinc ion binding IEP Predicted GO
MF GO:0008375 acetylglucosaminyltransferase activity IEP Predicted GO
MF GO:0043167 ion binding IEP Predicted GO
MF GO:0043169 cation binding IEP Predicted GO
MF GO:0046872 metal ion binding IEP Predicted GO
MF GO:0046914 transition metal ion binding IEP Predicted GO
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 112 159
IPR002885 Pentatricopeptide_repeat 14 50
IPR002885 Pentatricopeptide_repeat 345 392
IPR002885 Pentatricopeptide_repeat 446 492
IPR002885 Pentatricopeptide_repeat 189 213
IPR002885 Pentatricopeptide_repeat 246 272
IPR002885 Pentatricopeptide_repeat 586 612
IPR002885 Pentatricopeptide_repeat 420 445
IPR002885 Pentatricopeptide_repeat 215 245
IPR002885 Pentatricopeptide_repeat 521 544
IPR002885 Pentatricopeptide_repeat 319 344
No external refs found!