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  5. MA_98187g0010

MA_98187g0010


Description : (at1g72200 : 119.0) RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: LP.04 four leaves visible, 4 anthesis, petal differentiation and expansion stage, LP.08 eight leaves visible; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT1G22500.1); Has 9343 Blast hits to 9316 proteins in 282 species: Archae - 0; Bacteria - 4; Metazoa - 2295; Fungi - 806; Plants - 4899; Viruses - 51; Other Eukaryotes - 1288 (source: NCBI BLink). & (q9lrb7|el5_orysa : 82.4) E3 ubiquitin-protein ligase EL5 (EC 6.3.2.-) - Oryza sativa (Rice) & (reliability: 238.0) & (original description: no original description)


Gene families : OG_42_0000003 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Picea release: MA_98187g0010
Cluster HCCA clusters: Cluster_76

Target Alias Description ECC score Gene Family Method Actions
A4A49_18667 No alias ring-h2 finger protein atl18 0.05 Orthogroups_2024-Update
At1g72200 No alias RING-H2 finger protein ATL11... 0.03 Orthogroups_2024-Update
At4g35480 No alias RHA3B [Source:UniProtKB/TrEMBL;Acc:A0A178UXS9] 0.03 Orthogroups_2024-Update
At5g05280 No alias RING-H2 finger protein ATL73... 0.03 Orthogroups_2024-Update
Bradi1g32080 No alias RING-H2 finger A3A 0.03 Orthogroups_2024-Update
Bradi1g39010 No alias RING/U-box superfamily protein 0.02 Orthogroups_2024-Update
Bradi3g09395 No alias RING/U-box superfamily protein 0.02 Orthogroups_2024-Update
Bradi3g56160 No alias RING/U-box superfamily protein 0.02 Orthogroups_2024-Update
Bradi5g19960 No alias RING/U-box superfamily protein 0.02 Orthogroups_2024-Update
Brara.B02534.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.03 Orthogroups_2024-Update
Brara.J02316.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.03 Orthogroups_2024-Update
GRMZM2G401997 No alias RING/U-box superfamily protein 0.02 Orthogroups_2024-Update
GRMZM2G460958 No alias RING/U-box superfamily protein 0.03 Orthogroups_2024-Update
GRMZM2G467187 No alias RING/U-box superfamily protein 0.03 Orthogroups_2024-Update
Glyma.03G203400 No alias RING/U-box superfamily protein 0.07 Orthogroups_2024-Update
Glyma.03G239900 No alias RING/U-box superfamily protein 0.03 Orthogroups_2024-Update
Glyma.09G205600 No alias RING/U-box superfamily protein 0.04 Orthogroups_2024-Update
HORVU1Hr1G053130.1 No alias Unknown function 0.02 Orthogroups_2024-Update
HORVU1Hr1G069670.1 No alias Unknown function 0.03 Orthogroups_2024-Update
HORVU3Hr1G028260.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.04 Orthogroups_2024-Update
HORVU4Hr1G025400.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.02 Orthogroups_2024-Update
HORVU6Hr1G067020.2 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.03 Orthogroups_2024-Update
LOC_Os01g61470 No alias zinc finger, C3HC4 type domain containing protein, expressed 0.02 Orthogroups_2024-Update
LOC_Os02g08200 No alias zinc finger, C3HC4 type domain containing protein, expressed 0.02 Orthogroups_2024-Update
MA_107765g0010 No alias (at1g72200 : 140.0) RING/U-box superfamily protein;... 0.04 Orthogroups_2024-Update
MA_12352g0010 No alias no hits & (original description: no original description) 0.03 Orthogroups_2024-Update
MA_227897g0010 No alias (at3g16720 : 112.0) RING-H2 protein induced after... 0.04 Orthogroups_2024-Update
MA_69343g0010 No alias (at1g49230 : 137.0) RING/U-box superfamily protein;... 0.03 Orthogroups_2024-Update
Potri.014G043200 No alias RING/U-box superfamily protein 0.03 Orthogroups_2024-Update
Potri.014G076800 No alias RING/U-box superfamily protein 0.02 Orthogroups_2024-Update
Potri.014G091000 No alias RING/U-box superfamily protein 0.03 Orthogroups_2024-Update
Seita.1G004900.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Seita.1G203900.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.03 Orthogroups_2024-Update
Seita.9G336200.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Sobic.004G178400.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.03 Orthogroups_2024-Update
Sobic.006G092200.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.03 Orthogroups_2024-Update
Sobic.010G231400.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Solyc01g105610 No alias RING/U-box superfamily protein, putative (AHRD V3.3 ***... 0.03 Orthogroups_2024-Update
Solyc02g086950 No alias LOW QUALITY:RING/U-box superfamily protein, putative... 0.03 Orthogroups_2024-Update
Solyc06g064440 No alias RING/U-box superfamily protein, putative (AHRD V3.3 *-*... 0.03 Orthogroups_2024-Update
Solyc11g005310 No alias RING/U-box superfamily protein (AHRD V3.3 *** AT1G49230.1) 0.04 Orthogroups_2024-Update
Sopen01g048070 No alias Ring finger domain 0.02 Orthogroups_2024-Update
Sopen02g027080 No alias Ring finger domain 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003743 translation initiation factor activity IEP Predicted GO
MF GO:0003993 acid phosphatase activity IEP Predicted GO
BP GO:0006413 translational initiation IEP Predicted GO
MF GO:0008135 translation factor activity, RNA binding IEP Predicted GO
MF GO:0008289 lipid binding IEP Predicted GO
MF GO:0016788 hydrolase activity, acting on ester bonds IEP Predicted GO
MF GO:0016791 phosphatase activity IEP Predicted GO
InterPro domains Description Start Stop
IPR001841 Znf_RING 138 181
No external refs found!