Description : Pentatricopeptide repeat-containing protein (AHRD V3.3 *** A0A118JUV1_CYNCS)
Gene families : OG_42_0000001 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | Solanum release: Solyc11g005970 | |
Cluster | HCCA clusters: Cluster_96 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
171135 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.02 | Orthogroups_2024-Update | |
98955 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.02 | Orthogroups_2024-Update | |
At2g27610 | No alias | Pentatricopeptide repeat-containing protein At2g27610... | 0.05 | Orthogroups_2024-Update | |
At3g16610 | No alias | Pentatricopeptide repeat-containing protein At3g16610... | 0.03 | Orthogroups_2024-Update | |
Bradi3g41651 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.02 | Orthogroups_2024-Update | |
Glyma.01G048100 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.03 | Orthogroups_2024-Update | |
Glyma.12G001100 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.03 | Orthogroups_2024-Update | |
HORVU5Hr1G113330.1 | No alias | Unknown function | 0.02 | Orthogroups_2024-Update | |
HORVU7Hr1G111860.1 | No alias | Unknown function | 0.02 | Orthogroups_2024-Update | |
LOC_Os09g15800 | No alias | tetratricopeptide-like helical, putative, expressed | 0.02 | Orthogroups_2024-Update | |
LOC_Os09g24640 | No alias | pentatricopeptide, putative, expressed | 0.03 | Orthogroups_2024-Update | |
MA_138190g0010 | No alias | (at1g11290 : 553.0) Pentatricopeptide Repeat Protein... | 0.03 | Orthogroups_2024-Update | |
MA_286190g0010 | No alias | (at3g63370 : 605.0) Encodes a chloroplast RNA editing... | 0.03 | Orthogroups_2024-Update | |
MA_75255g0010 | No alias | (at4g33170 : 685.0) Tetratricopeptide repeat (TPR)-like... | 0.03 | Orthogroups_2024-Update | |
PSME_00022325-RA | No alias | (at3g09040 : 700.0) Pentatricopeptide repeat (PPR)... | 0.02 | Orthogroups_2024-Update | |
PSME_00048055-RA | No alias | (at4g13650 : 598.0) Pentatricopeptide repeat (PPR)... | 0.02 | Orthogroups_2024-Update | |
Potri.005G187800 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.03 | Orthogroups_2024-Update | |
Seita.4G100100.1 | No alias | Unknown function | 0.02 | Orthogroups_2024-Update | |
Seita.9G007900.1 | No alias | Unknown function | 0.02 | Orthogroups_2024-Update | |
Sopen01g002910 | No alias | PPR repeat | 0.02 | Orthogroups_2024-Update | |
Sopen01g006160 | No alias | PPR repeat | 0.03 | Orthogroups_2024-Update | |
Sopen01g036300 | No alias | PPR repeat family | 0.03 | Orthogroups_2024-Update | |
Sopen02g025050 | No alias | PPR repeat family | 0.03 | Orthogroups_2024-Update | |
Sopen02g033370 | No alias | PPR repeat family | 0.03 | Orthogroups_2024-Update | |
Sopen03g011150 | No alias | PPR repeat | 0.03 | Orthogroups_2024-Update | |
Sopen03g028590 | No alias | PPR repeat family | 0.04 | Orthogroups_2024-Update | |
Sopen04g026190 | No alias | PPR repeat family | 0.03 | Orthogroups_2024-Update | |
Sopen04g026710 | No alias | PPR repeat family | 0.02 | Orthogroups_2024-Update | |
Sopen05g002740 | No alias | PPR repeat family | 0.02 | Orthogroups_2024-Update | |
Sopen07g001950 | No alias | PPR repeat | 0.03 | Orthogroups_2024-Update | |
Sopen09g031050 | No alias | PPR repeat | 0.03 | Orthogroups_2024-Update | |
Sopen10g004380 | No alias | PPR repeat | 0.03 | Orthogroups_2024-Update | |
Sopen10g030830 | No alias | PPR repeat | 0.03 | Orthogroups_2024-Update | |
Sopen11g001900 | No alias | PPR repeat | 0.04 | Orthogroups_2024-Update | |
Sopen11g026910 | No alias | PPR repeat family | 0.04 | Orthogroups_2024-Update |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0008270 | zinc ion binding | IEA | InterProScan predictions |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
BP | GO:0000226 | microtubule cytoskeleton organization | IEP | Predicted GO |
CC | GO:0000922 | spindle pole | IEP | Predicted GO |
MF | GO:0003729 | mRNA binding | IEP | Predicted GO |
MF | GO:0004180 | carboxypeptidase activity | IEP | Predicted GO |
MF | GO:0004185 | serine-type carboxypeptidase activity | IEP | Predicted GO |
CC | GO:0005815 | microtubule organizing center | IEP | Predicted GO |
CC | GO:0005849 | mRNA cleavage factor complex | IEP | Predicted GO |
BP | GO:0006378 | mRNA polyadenylation | IEP | Predicted GO |
BP | GO:0007010 | cytoskeleton organization | IEP | Predicted GO |
BP | GO:0007020 | microtubule nucleation | IEP | Predicted GO |
MF | GO:0008238 | exopeptidase activity | IEP | Predicted GO |
MF | GO:0009916 | alternative oxidase activity | IEP | Predicted GO |
MF | GO:0016679 | oxidoreductase activity, acting on diphenols and related substances as donors | IEP | Predicted GO |
MF | GO:0016682 | oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor | IEP | Predicted GO |
MF | GO:0016854 | racemase and epimerase activity | IEP | Predicted GO |
MF | GO:0016855 | racemase and epimerase activity, acting on amino acids and derivatives | IEP | Predicted GO |
BP | GO:0031123 | RNA 3'-end processing | IEP | Predicted GO |
BP | GO:0031124 | mRNA 3'-end processing | IEP | Predicted GO |
MF | GO:0036361 | racemase activity, acting on amino acids and derivatives | IEP | Predicted GO |
MF | GO:0043015 | gamma-tubulin binding | IEP | Predicted GO |
BP | GO:0043631 | RNA polyadenylation | IEP | Predicted GO |
MF | GO:0070008 | serine-type exopeptidase activity | IEP | Predicted GO |
No external refs found! |