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  5. Pp1s100_236V6

Pp1s100_236V6


Description : T8F5.13; polyubiquitin, putative [Arabidopsis thaliana]


Gene families : OG_42_0000048 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000048_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Physcomitrella release: Pp1s100_236V6
Cluster HCCA clusters: Cluster_159

Target Alias Description ECC score Gene Family Method Actions
227280 No alias polyubiquitin 10 0.02 Orthogroups_2024-Update
271198 No alias polyubiquitin 10 0.02 Orthogroups_2024-Update
Brara.E02153.1 No alias UBQ ubiquitin-fold protein 0.02 Orthogroups_2024-Update
Cre06.g273600 No alias Ribosomal protein S27a / Ubiquitin family protein 0.01 Orthogroups_2024-Update
HORVU6Hr1G014970.1 No alias Unknown function 0.03 Orthogroups_2024-Update
HORVU6Hr1G016150.3 No alias UBQ ubiquitin-fold protein 0.02 Orthogroups_2024-Update
HORVU6Hr1G021700.4 No alias UBQ ubiquitin-fold protein 0.02 Orthogroups_2024-Update
LOC_Os08g08760 No alias ubiquitin family protein, putative, expressed 0.02 Orthogroups_2024-Update
LOC_Os09g25320 No alias ubiquitin family protein, putative, expressed 0.02 Orthogroups_2024-Update
LOC_Os09g31031 No alias ubiquitin family protein, putative, expressed 0.02 Orthogroups_2024-Update
LOC_Os09g39500 No alias ubiquitin fusion protein, putative, expressed 0.01 Orthogroups_2024-Update
MA_10435699g0010 No alias (at2g47110 : 207.0) polyubiquitin gene; ubiquitin 6... 0.02 Orthogroups_2024-Update
MA_20231g0010 No alias (at5g03240 : 528.0) encodes ubiquitin that is attached... 0.02 Orthogroups_2024-Update
MA_94077g0010 No alias (at5g03240 : 515.0) encodes ubiquitin that is attached... 0.03 Orthogroups_2024-Update
Mp8g00780.1 No alias component RPL40 of LSU proteome component 0.02 Orthogroups_2024-Update
Potri.016G077200 No alias ubiquitin extension protein 1 0.02 Orthogroups_2024-Update
Pp1s127_93V6 No alias polyubiquitin 2 0.03 Orthogroups_2024-Update
Pp1s333_9V6 No alias ubiquitin fusion protein 0.02 Orthogroups_2024-Update
Seita.2G302900.1 No alias component *(eL40) of large ribosomal-subunit (LSU) proteome 0.04 Orthogroups_2024-Update
Seita.4G253400.1 No alias UBQ ubiquitin-fold protein 0.03 Orthogroups_2024-Update
Sopen01g040060 No alias Ubiquitin family 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA InterProScan predictions
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR000626 Ubiquitin_dom 3 74
IPR000626 Ubiquitin_dom 79 130
No external refs found!