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  5. Pp1s102_105V6

Pp1s102_105V6


Description : ring finger


Gene families : OG_42_0000003 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Physcomitrella release: Pp1s102_105V6
Cluster HCCA clusters: Cluster_24

Target Alias Description ECC score Gene Family Method Actions
A4A49_09089 No alias ring-h2 finger protein atl57 0.03 Orthogroups_2024-Update
A4A49_10724 No alias ring-h2 finger protein atl33 0.02 Orthogroups_2024-Update
At1g33480 No alias RING-H2 finger protein ATL58... 0.03 Orthogroups_2024-Update
At1g35330 No alias RING/U-box superfamily protein [Source:TAIR;Acc:AT1G35330] 0.03 Orthogroups_2024-Update
At5g10380 No alias E3 ubiquitin-protein ligase RING1... 0.02 Orthogroups_2024-Update
Bradi4g42620 No alias RING/U-box superfamily protein 0.02 Orthogroups_2024-Update
Brara.F03530.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Brara.I02588.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.04 Orthogroups_2024-Update
GRMZM2G050774 No alias RING/U-box superfamily protein 0.03 Orthogroups_2024-Update
Glyma.17G050900 No alias RING/U-box superfamily protein 0.03 Orthogroups_2024-Update
HORVU2Hr1G077490.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.06 Orthogroups_2024-Update
HORVU3Hr1G028260.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.02 Orthogroups_2024-Update
HORVU3Hr1G028370.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.03 Orthogroups_2024-Update
HORVU4Hr1G082740.1 No alias Unknown function 0.04 Orthogroups_2024-Update
HORVU5Hr1G007760.1 No alias Unknown function 0.02 Orthogroups_2024-Update
HORVU5Hr1G079910.1 No alias Unknown function 0.02 Orthogroups_2024-Update
HORVU5Hr1G079930.1 No alias Unknown function 0.03 Orthogroups_2024-Update
HORVU6Hr1G004090.1 No alias Unknown function 0.02 Orthogroups_2024-Update
HORVU6Hr1G022590.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.02 Orthogroups_2024-Update
HORVU7Hr1G120930.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.02 Orthogroups_2024-Update
LOC_Os01g20910 No alias zinc finger, C3HC4 type domain containing protein, expressed 0.01 Orthogroups_2024-Update
LOC_Os02g15060 No alias zinc finger, C3HC4 type domain containing protein, expressed 0.01 Orthogroups_2024-Update
LOC_Os02g52210 No alias zinc finger, C3HC4 type domain containing protein, expressed 0.02 Orthogroups_2024-Update
LOC_Os02g58540 No alias RING-H2 finger protein, putative, expressed 0.03 Orthogroups_2024-Update
LOC_Os03g57410 No alias RING-H2 finger protein ATL5D, putative, expressed 0.02 Orthogroups_2024-Update
LOC_Os05g36310 No alias zinc finger, C3HC4 type domain containing protein, expressed 0.01 Orthogroups_2024-Update
LOC_Os06g34870 No alias Zinc finger, C3HC4 type domain containing protein, expressed 0.01 Orthogroups_2024-Update
MA_6934973g0010 No alias (at5g01880 : 125.0) RING/U-box superfamily protein;... 0.02 Orthogroups_2024-Update
MA_786911g0010 No alias (at1g53820 : 92.8) RING/U-box superfamily protein;... 0.02 Orthogroups_2024-Update
PSME_00054668-RA No alias (at5g01880 : 101.0) RING/U-box superfamily protein;... 0.03 Orthogroups_2024-Update
Potri.008G019000 No alias RING/U-box superfamily protein 0.04 Orthogroups_2024-Update
Seita.2G390800.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.004G170300.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.008G030200.2 No alias Unknown function 0.04 Orthogroups_2024-Update
Sobic.010G157300.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.02 Orthogroups_2024-Update
Solyc01g100100 No alias RING/U-box superfamily protein, putative (AHRD V3.3 ***... 0.02 Orthogroups_2024-Update
Solyc11g066510 No alias RING/U-box superfamily protein (AHRD V3.3 *** AT2G27940.1) 0.02 Orthogroups_2024-Update
Sopen01g002900 No alias Ring finger domain 0.02 Orthogroups_2024-Update
Sopen03g041450 No alias Ring finger domain 0.03 Orthogroups_2024-Update
Sopen04g036320 No alias Ring finger domain 0.02 Orthogroups_2024-Update
Sopen06g022560 No alias Ring finger domain 0.02 Orthogroups_2024-Update
Sopen11g002340 No alias Ring finger domain 0.02 Orthogroups_2024-Update
Sopen12g029900 No alias Ring finger domain 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000049 tRNA binding IEP Predicted GO
MF GO:0004222 metalloendopeptidase activity IEP Predicted GO
MF GO:0004812 aminoacyl-tRNA ligase activity IEP Predicted GO
BP GO:0006457 protein folding IEP Predicted GO
BP GO:0008150 biological_process IEP Predicted GO
MF GO:0008237 metallopeptidase activity IEP Predicted GO
MF GO:0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor IEP Predicted GO
MF GO:0016651 oxidoreductase activity, acting on NAD(P)H IEP Predicted GO
MF GO:0016655 oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor IEP Predicted GO
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP Predicted GO
MF GO:0016903 oxidoreductase activity, acting on the aldehyde or oxo group of donors IEP Predicted GO
BP GO:0043038 amino acid activation IEP Predicted GO
BP GO:0043039 tRNA aminoacylation IEP Predicted GO
MF GO:0140101 catalytic activity, acting on a tRNA IEP Predicted GO
InterPro domains Description Start Stop
IPR001841 Znf_RING 149 192
No external refs found!