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  5. Pp1s102_155V6

Pp1s102_155V6


Description : nucleic acid binding


Gene families : OG_42_0000464 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000464_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Physcomitrella release: Pp1s102_155V6
Cluster HCCA clusters: Cluster_191

Target Alias Description ECC score Gene Family Method Actions
Brara.C00831.1 No alias regulatory protein of RNA homeostasis 0.04 Orthogroups_2024-Update
GRMZM2G475017 No alias Zinc finger C-x8-C-x5-C-x3-H type family protein 0.02 Orthogroups_2024-Update
Pp1s6_324V6 No alias nucleic acid binding 0.03 Orthogroups_2024-Update
Sobic.003G117800.1 No alias regulatory protein of RNA homeostasis 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0046872 metal ion binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
CC GO:0000123 histone acetyltransferase complex IEP Predicted GO
MF GO:0004478 methionine adenosyltransferase activity IEP Predicted GO
BP GO:0006556 S-adenosylmethionine biosynthetic process IEP Predicted GO
BP GO:0006790 sulfur compound metabolic process IEP Predicted GO
BP GO:0009108 coenzyme biosynthetic process IEP Predicted GO
MF GO:0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups IEP Predicted GO
CC GO:0031248 protein acetyltransferase complex IEP Predicted GO
BP GO:0044272 sulfur compound biosynthetic process IEP Predicted GO
CC GO:0044451 nucleoplasm part IEP Predicted GO
BP GO:0046500 S-adenosylmethionine metabolic process IEP Predicted GO
CC GO:0070461 SAGA-type complex IEP Predicted GO
CC GO:1902493 acetyltransferase complex IEP Predicted GO
CC GO:1990234 transferase complex IEP Predicted GO
InterPro domains Description Start Stop
IPR000571 Znf_CCCH 125 149
IPR000571 Znf_CCCH 21 46
IPR000571 Znf_CCCH 326 351
IPR000571 Znf_CCCH 374 396
IPR000571 Znf_CCCH 171 195
No external refs found!