1. Home
  2. Species
  3. Physcomitrella patens
  4. Sequence
  5. Pp1s104_126V6

Pp1s104_126V6


Description : ring zinc finger


Gene families : OG_42_0002515 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0002515_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Physcomitrella release: Pp1s104_126V6
Cluster HCCA clusters: Cluster_41

Target Alias Description ECC score Gene Family Method Actions
At1g74370 No alias At1g74370 [Source:UniProtKB/TrEMBL;Acc:Q9CA76] 0.03 Orthogroups_2024-Update
Brara.G02865.1 No alias E3 ubiquitin ligase 0.04 Orthogroups_2024-Update
Brara.G03183.1 No alias E3 ubiquitin ligase 0.03 Orthogroups_2024-Update
GRMZM2G030955 No alias RING/U-box superfamily protein 0.03 Orthogroups_2024-Update
Seita.9G360300.1 No alias E3 ubiquitin ligase 0.03 Orthogroups_2024-Update
Seita.9G494800.1 No alias E3 ubiquitin ligase 0.03 Orthogroups_2024-Update
Sopen02g033290 No alias RING-type zinc-finger 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000272 polysaccharide catabolic process IEP Predicted GO
MF GO:0003674 molecular_function IEP Predicted GO
MF GO:0003824 catalytic activity IEP Predicted GO
MF GO:0004066 asparagine synthase (glutamine-hydrolyzing) activity IEP Predicted GO
MF GO:0004222 metalloendopeptidase activity IEP Predicted GO
MF GO:0004392 heme oxygenase (decyclizing) activity IEP Predicted GO
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEP Predicted GO
MF GO:0004806 triglyceride lipase activity IEP Predicted GO
MF GO:0005507 copper ion binding IEP Predicted GO
BP GO:0006528 asparagine metabolic process IEP Predicted GO
BP GO:0006529 asparagine biosynthetic process IEP Predicted GO
BP GO:0006778 porphyrin-containing compound metabolic process IEP Predicted GO
BP GO:0006788 heme oxidation IEP Predicted GO
BP GO:0007034 vacuolar transport IEP Predicted GO
MF GO:0008131 primary amine oxidase activity IEP Predicted GO
BP GO:0008150 biological_process IEP Predicted GO
BP GO:0008152 metabolic process IEP Predicted GO
BP GO:0009066 aspartate family amino acid metabolic process IEP Predicted GO
BP GO:0009067 aspartate family amino acid biosynthetic process IEP Predicted GO
BP GO:0009308 amine metabolic process IEP Predicted GO
MF GO:0016160 amylase activity IEP Predicted GO
MF GO:0016161 beta-amylase activity IEP Predicted GO
MF GO:0016298 lipase activity IEP Predicted GO
MF GO:0016491 oxidoreductase activity IEP Predicted GO
MF GO:0016624 oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor IEP Predicted GO
MF GO:0016638 oxidoreductase activity, acting on the CH-NH2 group of donors IEP Predicted GO
MF GO:0016641 oxidoreductase activity, acting on the CH-NH2 group of donors, oxygen as acceptor IEP Predicted GO
MF GO:0016798 hydrolase activity, acting on glycosyl bonds IEP Predicted GO
MF GO:0016879 ligase activity, forming carbon-nitrogen bonds IEP Predicted GO
MF GO:0016884 carbon-nitrogen ligase activity, with glutamine as amido-N-donor IEP Predicted GO
MF GO:0016903 oxidoreductase activity, acting on the aldehyde or oxo group of donors IEP Predicted GO
BP GO:0033013 tetrapyrrole metabolic process IEP Predicted GO
BP GO:0042168 heme metabolic process IEP Predicted GO
BP GO:0042440 pigment metabolic process IEP Predicted GO
BP GO:0044238 primary metabolic process IEP Predicted GO
MF GO:0048038 quinone binding IEP Predicted GO
BP GO:0071704 organic substance metabolic process IEP Predicted GO
BP GO:1901564 organonitrogen compound metabolic process IEP Predicted GO
InterPro domains Description Start Stop
IPR001841 Znf_RING 43 98
No external refs found!