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  5. Pp1s106_134V6

Pp1s106_134V6


Description : brix domain containing 2


Gene families : OG_42_0004734 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0004734_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Physcomitrella release: Pp1s106_134V6
Cluster HCCA clusters: Cluster_187

Target Alias Description ECC score Gene Family Method Actions
66840 No alias Ribosomal RNA processing Brix domain protein 0.03 Orthogroups_2024-Update
At1g52930 No alias Ribosome biogenesis protein BRX1 homolog 2... 0.02 Orthogroups_2024-Update
Bradi3g47400 No alias Ribosomal RNA processing Brix domain protein 0.02 Orthogroups_2024-Update
Cre02.g095400 No alias Ribosomal RNA processing Brix domain protein 0.03 Orthogroups_2024-Update
Kfl00237_0010 kfl00237_0010_v1.1 (at3g15460 : 339.0) Ribosomal RNA processing Brix domain... 0.02 Orthogroups_2024-Update
MA_14692g0010 No alias (at3g15460 : 436.0) Ribosomal RNA processing Brix domain... 0.02 Orthogroups_2024-Update
Seita.1G215000.1 No alias assembly factor involved in ITS1 rRNA removal *(BRIX1) 0.03 Orthogroups_2024-Update
Sobic.004G198500.1 No alias assembly factor involved in ITS1 rRNA removal *(BRIX1) 0.02 Orthogroups_2024-Update
Solyc04g016380 No alias Ribosome biogenesis protein brix, putative (AHRD V3.3... 0.05 Orthogroups_2024-Update
evm.model.contig_2347.3 No alias (at3g15460 : 210.0) Ribosomal RNA processing Brix domain... 0.01 Orthogroups_2024-Update
evm.model.tig00001206.16 No alias (at1g52930 : 204.0) Ribosomal RNA processing Brix domain... 0.01 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000154 rRNA modification IEP Predicted GO
BP GO:0001510 RNA methylation IEP Predicted GO
MF GO:0001882 nucleoside binding IEP Predicted GO
MF GO:0001883 purine nucleoside binding IEP Predicted GO
MF GO:0003690 double-stranded DNA binding IEP Predicted GO
MF GO:0003924 GTPase activity IEP Predicted GO
MF GO:0005525 GTP binding IEP Predicted GO
BP GO:0006364 rRNA processing IEP Predicted GO
MF GO:0008173 RNA methyltransferase activity IEP Predicted GO
MF GO:0008234 cysteine-type peptidase activity IEP Predicted GO
MF GO:0008649 rRNA methyltransferase activity IEP Predicted GO
MF GO:0008757 S-adenosylmethionine-dependent methyltransferase activity IEP Predicted GO
BP GO:0009451 RNA modification IEP Predicted GO
BP GO:0016072 rRNA metabolic process IEP Predicted GO
MF GO:0016435 rRNA (guanine) methyltransferase activity IEP Predicted GO
BP GO:0016579 protein deubiquitination IEP Predicted GO
MF GO:0017111 nucleoside-triphosphatase activity IEP Predicted GO
MF GO:0019001 guanyl nucleotide binding IEP Predicted GO
MF GO:0019783 ubiquitin-like protein-specific protease activity IEP Predicted GO
BP GO:0031167 rRNA methylation IEP Predicted GO
BP GO:0032259 methylation IEP Predicted GO
MF GO:0032549 ribonucleoside binding IEP Predicted GO
MF GO:0032550 purine ribonucleoside binding IEP Predicted GO
MF GO:0032561 guanyl ribonucleotide binding IEP Predicted GO
BP GO:0034470 ncRNA processing IEP Predicted GO
BP GO:0034622 cellular protein-containing complex assembly IEP Predicted GO
BP GO:0036265 RNA (guanine-N7)-methylation IEP Predicted GO
MF GO:0036459 thiol-dependent ubiquitinyl hydrolase activity IEP Predicted GO
BP GO:0043414 macromolecule methylation IEP Predicted GO
BP GO:0043461 proton-transporting ATP synthase complex assembly IEP Predicted GO
BP GO:0065003 protein-containing complex assembly IEP Predicted GO
BP GO:0070071 proton-transporting two-sector ATPase complex assembly IEP Predicted GO
BP GO:0070475 rRNA base methylation IEP Predicted GO
BP GO:0070476 rRNA (guanine-N7)-methylation IEP Predicted GO
BP GO:0070646 protein modification by small protein removal IEP Predicted GO
MF GO:0101005 ubiquitinyl hydrolase activity IEP Predicted GO
MF GO:0140102 catalytic activity, acting on a rRNA IEP Predicted GO
InterPro domains Description Start Stop
IPR007109 Brix 72 262
No external refs found!