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  5. Pp1s106_209V6

Pp1s106_209V6


Description : F6F3.23; expressed protein [Arabidopsis thaliana]


Gene families : OG_42_0000195 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000195_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Physcomitrella release: Pp1s106_209V6
Cluster HCCA clusters: Cluster_47

Target Alias Description ECC score Gene Family Method Actions
404468 No alias TRICHOME BIREFRINGENCE-LIKE 23 0.06 Orthogroups_2024-Update
A4A49_29717 No alias protein trichome birefringence-like 19 0.01 Orthogroups_2024-Update
At1g70230 No alias TBL27 [Source:UniProtKB/TrEMBL;Acc:A0A178WG99] 0.03 Orthogroups_2024-Update
At5g51640 No alias Protein YLS7 [Source:UniProtKB/Swiss-Prot;Acc:Q9FHM0] 0.02 Orthogroups_2024-Update
Bradi1g38400 No alias TRICHOME BIREFRINGENCE-LIKE 24 0.04 Orthogroups_2024-Update
Bradi3g56217 No alias TRICHOME BIREFRINGENCE-LIKE 21 0.03 Orthogroups_2024-Update
Brara.B01508.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Brara.F03160.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Brara.I00067.1 No alias mannan O-acetyltransferase *(MOAT) 0.02 Orthogroups_2024-Update
Brara.I02555.1 No alias mannan O-acetyltransferase *(MOAT) 0.02 Orthogroups_2024-Update
Brara.K00788.1 No alias Unknown function 0.02 Orthogroups_2024-Update
GRMZM2G004183 No alias TRICHOME BIREFRINGENCE-LIKE 19 0.03 Orthogroups_2024-Update
GRMZM2G305439 No alias TRICHOME BIREFRINGENCE-LIKE 21 0.02 Orthogroups_2024-Update
Glyma.08G021600 No alias TRICHOME BIREFRINGENCE-LIKE 23 0.03 Orthogroups_2024-Update
Glyma.13G229800 No alias TRICHOME BIREFRINGENCE-LIKE 19 0.02 Orthogroups_2024-Update
Glyma.19G041300 No alias TRICHOME BIREFRINGENCE-LIKE 19 0.03 Orthogroups_2024-Update
HORVU7Hr1G043010.1 No alias Unknown function 0.02 Orthogroups_2024-Update
PSME_00051292-RA No alias (at4g01080 : 390.0) Encodes a member of the TBL... 0.02 Orthogroups_2024-Update
Potri.001G093800 No alias TRICHOME BIREFRINGENCE-LIKE 23 0.02 Orthogroups_2024-Update
Potri.004G105500 No alias TRICHOME BIREFRINGENCE-LIKE 19 0.02 Orthogroups_2024-Update
Potri.004G105600 No alias TRICHOME BIREFRINGENCE-LIKE 19 0.03 Orthogroups_2024-Update
Potri.017G110200 No alias TRICHOME BIREFRINGENCE-LIKE 19 0.02 Orthogroups_2024-Update
Pp1s2_52V6 No alias F2N1.14; expressed protein [Arabidopsis thaliana] 0.03 Orthogroups_2024-Update
Seita.4G166700.1 No alias mannan O-acetyltransferase *(MOAT) 0.04 Orthogroups_2024-Update
Seita.5G246900.1 No alias Unknown function 0.07 Orthogroups_2024-Update
Solyc02g089690 No alias Trichome birefringence-like 19 (AHRD V3.3 *** A0A061EH35_THECC) 0.02 Orthogroups_2024-Update
Solyc03g007120 No alias Trichome birefringence-like protein (AHRD V3.3 ***... 0.02 Orthogroups_2024-Update
Solyc08g082060 No alias Trichome birefringence-like protein (AHRD V3.3 ***... 0.03 Orthogroups_2024-Update
Sopen02g034410 No alias GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p 0.02 Orthogroups_2024-Update
Sopen03g009740 No alias GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP Predicted GO
MF GO:0003700 DNA-binding transcription factor activity IEP Predicted GO
MF GO:0003779 actin binding IEP Predicted GO
MF GO:0004175 endopeptidase activity IEP Predicted GO
MF GO:0004252 serine-type endopeptidase activity IEP Predicted GO
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEP Predicted GO
MF GO:0004568 chitinase activity IEP Predicted GO
MF GO:0004888 transmembrane signaling receptor activity IEP Predicted GO
MF GO:0004970 ionotropic glutamate receptor activity IEP Predicted GO
MF GO:0005096 GTPase activator activity IEP Predicted GO
MF GO:0005230 extracellular ligand-gated ion channel activity IEP Predicted GO
MF GO:0005515 protein binding IEP Predicted GO
BP GO:0005975 carbohydrate metabolic process IEP Predicted GO
BP GO:0006022 aminoglycan metabolic process IEP Predicted GO
BP GO:0006026 aminoglycan catabolic process IEP Predicted GO
BP GO:0006030 chitin metabolic process IEP Predicted GO
BP GO:0006032 chitin catabolic process IEP Predicted GO
BP GO:0006040 amino sugar metabolic process IEP Predicted GO
BP GO:0006355 regulation of transcription, DNA-templated IEP Predicted GO
MF GO:0008066 glutamate receptor activity IEP Predicted GO
MF GO:0008236 serine-type peptidase activity IEP Predicted GO
BP GO:0009889 regulation of biosynthetic process IEP Predicted GO
BP GO:0010468 regulation of gene expression IEP Predicted GO
BP GO:0010556 regulation of macromolecule biosynthetic process IEP Predicted GO
MF GO:0015267 channel activity IEP Predicted GO
MF GO:0015276 ligand-gated ion channel activity IEP Predicted GO
MF GO:0016787 hydrolase activity IEP Predicted GO
MF GO:0016798 hydrolase activity, acting on glycosyl bonds IEP Predicted GO
BP GO:0016998 cell wall macromolecule catabolic process IEP Predicted GO
MF GO:0017171 serine hydrolase activity IEP Predicted GO
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP Predicted GO
BP GO:0019222 regulation of metabolic process IEP Predicted GO
MF GO:0022803 passive transmembrane transporter activity IEP Predicted GO
MF GO:0022824 transmitter-gated ion channel activity IEP Predicted GO
MF GO:0022834 ligand-gated channel activity IEP Predicted GO
MF GO:0022835 transmitter-gated channel activity IEP Predicted GO
MF GO:0022836 gated channel activity IEP Predicted GO
MF GO:0022839 ion gated channel activity IEP Predicted GO
CC GO:0030126 COPI vesicle coat IEP Predicted GO
MF GO:0030594 neurotransmitter receptor activity IEP Predicted GO
BP GO:0031323 regulation of cellular metabolic process IEP Predicted GO
BP GO:0031326 regulation of cellular biosynthetic process IEP Predicted GO
MF GO:0038023 signaling receptor activity IEP Predicted GO
BP GO:0042737 drug catabolic process IEP Predicted GO
MF GO:0043565 sequence-specific DNA binding IEP Predicted GO
BP GO:0044036 cell wall macromolecule metabolic process IEP Predicted GO
BP GO:0046348 amino sugar catabolic process IEP Predicted GO
BP GO:0051171 regulation of nitrogen compound metabolic process IEP Predicted GO
BP GO:0051252 regulation of RNA metabolic process IEP Predicted GO
MF GO:0060089 molecular transducer activity IEP Predicted GO
BP GO:0060255 regulation of macromolecule metabolic process IEP Predicted GO
BP GO:0080090 regulation of primary metabolic process IEP Predicted GO
MF GO:0140110 transcription regulator activity IEP Predicted GO
BP GO:1901071 glucosamine-containing compound metabolic process IEP Predicted GO
BP GO:1901072 glucosamine-containing compound catabolic process IEP Predicted GO
BP GO:1903506 regulation of nucleic acid-templated transcription IEP Predicted GO
BP GO:2000112 regulation of cellular macromolecule biosynthetic process IEP Predicted GO
BP GO:2001141 regulation of RNA biosynthetic process IEP Predicted GO
InterPro domains Description Start Stop
IPR025846 PMR5_N_dom 174 226
IPR026057 PC-Esterase 227 520
No external refs found!