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Pp1s106_4V6


Description : wd repeat and fyve domain containing isoform cra_a


Gene families : OG_42_0005216 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0005216_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Physcomitrella release: Pp1s106_4V6
Cluster HCCA clusters: Cluster_266

Target Alias Description ECC score Gene Family Method Actions
Bradi1g08917 No alias Beige/BEACH domain ;WD domain, G-beta repeat protein 0.04 Orthogroups_2024-Update
Glyma.02G144200 No alias Beige/BEACH domain ;WD domain, G-beta repeat protein 0.03 Orthogroups_2024-Update
Glyma.10G030000 No alias Beige/BEACH domain ;WD domain, G-beta repeat protein 0.05 Orthogroups_2024-Update
Kfl00141_0225 kfl00141_0225_v1.1 (at4g02660 : 924.0) Beige/BEACH domain ;WD domain,... 0.04 Orthogroups_2024-Update
MA_12084g0010 No alias (at1g03060 : 3258.0) Encodes a WD/BEACH domain protein... 0.04 Orthogroups_2024-Update
PSME_00007905-RA No alias (at1g03060 : 969.0) Encodes a WD/BEACH domain protein... 0.02 Orthogroups_2024-Update
Seita.9G096400.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Sobic.001G093800.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Solyc09g065700 No alias BEACH-DOMAIN HOMOLOG A1 (AHRD V3.3 *** AT1G03060.2) 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA InterProScan predictions
MF GO:0046872 metal ion binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0003682 chromatin binding IEP Predicted GO
MF GO:0003968 RNA-directed 5'-3' RNA polymerase activity IEP Predicted GO
MF GO:0004402 histone acetyltransferase activity IEP Predicted GO
MF GO:0004519 endonuclease activity IEP Predicted GO
MF GO:0004521 endoribonuclease activity IEP Predicted GO
MF GO:0004525 ribonuclease III activity IEP Predicted GO
MF GO:0004540 ribonuclease activity IEP Predicted GO
BP GO:0006473 protein acetylation IEP Predicted GO
BP GO:0006475 internal protein amino acid acetylation IEP Predicted GO
BP GO:0007186 G protein-coupled receptor signaling pathway IEP Predicted GO
MF GO:0008080 N-acetyltransferase activity IEP Predicted GO
MF GO:0008081 phosphoric diester hydrolase activity IEP Predicted GO
MF GO:0008536 Ran GTPase binding IEP Predicted GO
MF GO:0016407 acetyltransferase activity IEP Predicted GO
MF GO:0016410 N-acyltransferase activity IEP Predicted GO
BP GO:0016569 covalent chromatin modification IEP Predicted GO
BP GO:0016570 histone modification IEP Predicted GO
BP GO:0016573 histone acetylation IEP Predicted GO
MF GO:0016788 hydrolase activity, acting on ester bonds IEP Predicted GO
MF GO:0016891 endoribonuclease activity, producing 5'-phosphomonoesters IEP Predicted GO
MF GO:0016893 endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters IEP Predicted GO
MF GO:0017016 Ras GTPase binding IEP Predicted GO
BP GO:0018205 peptidyl-lysine modification IEP Predicted GO
BP GO:0018393 internal peptidyl-lysine acetylation IEP Predicted GO
BP GO:0018394 peptidyl-lysine acetylation IEP Predicted GO
MF GO:0031267 small GTPase binding IEP Predicted GO
MF GO:0032296 double-stranded RNA-specific ribonuclease activity IEP Predicted GO
MF GO:0034212 peptide N-acetyltransferase activity IEP Predicted GO
MF GO:0042393 histone binding IEP Predicted GO
BP GO:0043543 protein acylation IEP Predicted GO
MF GO:0061733 peptide-lysine-N-acetyltransferase activity IEP Predicted GO
MF GO:0140098 catalytic activity, acting on RNA IEP Predicted GO
InterPro domains Description Start Stop
IPR001680 WD40_repeat 3336 3373
IPR001680 WD40_repeat 3287 3323
IPR023362 PH-BEACH_dom 2836 2892
IPR000306 Znf_FYVE 3587 3645
IPR000409 BEACH_dom 2931 3209
No external refs found!