1. Home
  2. Species
  3. Solanum lycopersicum
  4. Sequence
  5. Solyc11g007170

Solyc11g007170


Description : Katanin p60 ATPase-containing subunit A1 (AHRD V3.3 *** A0A0J8ECK3_BETVU)


Gene families : OG_42_0002387 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0002387_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Solyc11g007170
Cluster HCCA clusters: Cluster_124

Target Alias Description ECC score Gene Family Method Actions
At1g08270 No alias CONTAINS InterPro DOMAIN/s: MIT (InterPro:IPR007330);... 0.04 Orthogroups_2024-Update
Sopen11g026930 No alias ATPase family associated with various cellular activities (AAA) 0.04 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA InterProScan predictions
Toggle parental
Type GO Term Name Evidence Source
MF GO:0004521 endoribonuclease activity IEP Predicted GO
MF GO:0004525 ribonuclease III activity IEP Predicted GO
MF GO:0005515 protein binding IEP Predicted GO
MF GO:0016891 endoribonuclease activity, producing 5'-phosphomonoesters IEP Predicted GO
MF GO:0016893 endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters IEP Predicted GO
MF GO:0032296 double-stranded RNA-specific ribonuclease activity IEP Predicted GO
InterPro domains Description Start Stop
IPR007330 MIT 7 70
IPR015415 Vps4_C 369 433
IPR003959 ATPase_AAA_core 169 299
No external refs found!