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Description : pectate lyase
Gene families : OG_42_0000086 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000086_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | Physcomitrella release: Pp1s112_172V6 | |
| Cluster | HCCA clusters: Cluster_230 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| At1g67750 | No alias | Probable pectate lyase 5 [Source:UniProtKB/Swiss-Prot;Acc:Q9FXD8] | 0.04 | Orthogroups_2024-Update | |
| At3g53190 | No alias | Pectate lyase [Source:UniProtKB/TrEMBL;Acc:Q56XU8] | 0.04 | Orthogroups_2024-Update | |
| Glyma.19G053800 | No alias | Pectin lyase-like superfamily protein | 0.02 | Orthogroups_2024-Update | |
| MA_10437227g0020 | No alias | (at4g13710 : 576.0) Pectin lyase-like superfamily... | 0.02 | Orthogroups_2024-Update | |
| Mp3g01000.1 | No alias | pectate lyase | 0.02 | Orthogroups_2024-Update | |
| PSME_00020308-RA | No alias | (at4g13710 : 598.0) Pectin lyase-like superfamily... | 0.02 | Orthogroups_2024-Update | |
| Potri.017G078400 | No alias | Pectate lyase family protein | 0.02 | Orthogroups_2024-Update | |
| Seita.4G033100.1 | No alias | EC_4.2 carbon-oxygen lyase | 0.03 | Orthogroups_2024-Update | |
| Seita.7G017900.1 | No alias | pectate lyase & EC_4.2 carbon-oxygen lyase | 0.03 | Orthogroups_2024-Update | |
| Sobic.001G230400.1 | No alias | pectate lyase & EC_4.2 carbon-oxygen lyase | 0.03 | Orthogroups_2024-Update | |
| Solyc02g087670 | No alias | Pectate lyase (AHRD V3.3 *** K4BBS3_SOLLC) | 0.03 | Orthogroups_2024-Update | |
| Solyc09g008380 | No alias | Pectate lyase (AHRD V3.3 *** K4CQM6_SOLLC) | 0.03 | Orthogroups_2024-Update |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0004674 | protein serine/threonine kinase activity | IEP | Predicted GO |
| MF | GO:0004683 | calmodulin-dependent protein kinase activity | IEP | Predicted GO |
| MF | GO:0004743 | pyruvate kinase activity | IEP | Predicted GO |
| MF | GO:0005516 | calmodulin binding | IEP | Predicted GO |
| BP | GO:0006066 | alcohol metabolic process | IEP | Predicted GO |
| BP | GO:0006729 | tetrahydrobiopterin biosynthetic process | IEP | Predicted GO |
| BP | GO:0006732 | coenzyme metabolic process | IEP | Predicted GO |
| MF | GO:0008124 | 4-alpha-hydroxytetrahydrobiopterin dehydratase activity | IEP | Predicted GO |
| MF | GO:0009055 | electron transfer activity | IEP | Predicted GO |
| BP | GO:0009108 | coenzyme biosynthetic process | IEP | Predicted GO |
| MF | GO:0010309 | acireductone dioxygenase [iron(II)-requiring] activity | IEP | Predicted GO |
| MF | GO:0016702 | oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen | IEP | Predicted GO |
| MF | GO:0016836 | hydro-lyase activity | IEP | Predicted GO |
| MF | GO:0016872 | intramolecular lyase activity | IEP | Predicted GO |
| BP | GO:0017144 | drug metabolic process | IEP | Predicted GO |
| BP | GO:0019751 | polyol metabolic process | IEP | Predicted GO |
| MF | GO:0019843 | rRNA binding | IEP | Predicted GO |
| BP | GO:0019915 | lipid storage | IEP | Predicted GO |
| MF | GO:0030955 | potassium ion binding | IEP | Predicted GO |
| MF | GO:0031420 | alkali metal ion binding | IEP | Predicted GO |
| BP | GO:0034311 | diol metabolic process | IEP | Predicted GO |
| BP | GO:0034312 | diol biosynthetic process | IEP | Predicted GO |
| BP | GO:0042558 | pteridine-containing compound metabolic process | IEP | Predicted GO |
| BP | GO:0042559 | pteridine-containing compound biosynthetic process | IEP | Predicted GO |
| BP | GO:0044283 | small molecule biosynthetic process | IEP | Predicted GO |
| BP | GO:0046146 | tetrahydrobiopterin metabolic process | IEP | Predicted GO |
| BP | GO:0046165 | alcohol biosynthetic process | IEP | Predicted GO |
| BP | GO:0046173 | polyol biosynthetic process | IEP | Predicted GO |
| BP | GO:0051186 | cofactor metabolic process | IEP | Predicted GO |
| BP | GO:0051188 | cofactor biosynthetic process | IEP | Predicted GO |
| MF | GO:0051213 | dioxygenase activity | IEP | Predicted GO |
| BP | GO:0051235 | maintenance of location | IEP | Predicted GO |
| BP | GO:1901615 | organic hydroxy compound metabolic process | IEP | Predicted GO |
| BP | GO:1901617 | organic hydroxy compound biosynthetic process | IEP | Predicted GO |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR002022 | Pec_lyase | 141 | 326 |
| No external refs found! |