1. Home
  2. Species
  3. Physcomitrella patens
  4. Sequence
  5. Pp1s114_169V6

Pp1s114_169V6


Description : transposon mutator sub- expressed


Gene families : OG_42_0000067 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000067_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Physcomitrella release: Pp1s114_169V6
Cluster HCCA clusters: Cluster_137

Target Alias Description ECC score Gene Family Method Actions
424061 No alias Phototropic-responsive NPH3 family protein 0.03 Orthogroups_2024-Update
HORVU1Hr1G034650.2 No alias Unknown function 0.03 Orthogroups_2024-Update
HORVU4Hr1G013420.5 No alias substrate adaptor *(NPY) of CUL3-BTB E3 ubiquitin ligase complex 0.02 Orthogroups_2024-Update
MA_107543g0010 No alias (at1g67900 : 561.0) Phototropic-responsive NPH3 family... 0.03 Orthogroups_2024-Update
Mp5g03480.1 No alias BTB/POZ domain-containing protein At1g67900... 0.02 Orthogroups_2024-Update
PSME_00028520-RA No alias (at5g48130 : 265.0) Phototropic-responsive NPH3 family... 0.02 Orthogroups_2024-Update
Seita.7G303000.1 No alias Unknown function 0.04 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA InterProScan predictions
Toggle parental
Type GO Term Name Evidence Source
MF GO:0002161 aminoacyl-tRNA editing activity IEP Predicted GO
MF GO:0003723 RNA binding IEP Predicted GO
MF GO:0003746 translation elongation factor activity IEP Predicted GO
MF GO:0004298 threonine-type endopeptidase activity IEP Predicted GO
CC GO:0005575 cellular_component IEP Predicted GO
CC GO:0005622 intracellular IEP Predicted GO
CC GO:0005839 proteasome core complex IEP Predicted GO
BP GO:0006414 translational elongation IEP Predicted GO
BP GO:0006996 organelle organization IEP Predicted GO
BP GO:0007030 Golgi organization IEP Predicted GO
MF GO:0008135 translation factor activity, RNA binding IEP Predicted GO
MF GO:0008171 O-methyltransferase activity IEP Predicted GO
BP GO:0016197 endosomal transport IEP Predicted GO
BP GO:0016482 cytosolic transport IEP Predicted GO
MF GO:0019843 rRNA binding IEP Predicted GO
CC GO:0030906 retromer, cargo-selective complex IEP Predicted GO
CC GO:0032991 protein-containing complex IEP Predicted GO
BP GO:0042147 retrograde transport, endosome to Golgi IEP Predicted GO
CC GO:0044464 cell part IEP Predicted GO
BP GO:0051603 proteolysis involved in cellular protein catabolic process IEP Predicted GO
MF GO:0052689 carboxylic ester hydrolase activity IEP Predicted GO
MF GO:0070003 threonine-type peptidase activity IEP Predicted GO
MF GO:0140101 catalytic activity, acting on a tRNA IEP Predicted GO
InterPro domains Description Start Stop
IPR027356 NPH3_dom 219 483
IPR000210 BTB/POZ_dom 27 118
No external refs found!