Solyc11g008510

Description : 60S ribosomal protein L38 (AHRD V3.3 *** RL38_SOLLC)

Gene families : OG_42_0001927 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001927_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Solanum release: Solyc11g008510
Cluster	HCCA clusters: Cluster_113

Target	Alias	Description	ECC score	Gene Family Method
270247	No alias	Ribosomal L38e protein family	0.11	Orthogroups_2024-Update
A4A49_59471	No alias	60s ribosomal protein l38	0.11	Orthogroups_2024-Update
AC190609.3_FG002	No alias	Ribosomal L38e protein family	0.03	Orthogroups_2024-Update
At3g59540	No alias	60S ribosomal protein L38...	0.02	Orthogroups_2024-Update
Bradi1g25302	No alias	Ribosomal L38e protein family	0.05	Orthogroups_2024-Update
Bradi3g41837	No alias	Ribosomal L38e protein family	0.06	Orthogroups_2024-Update
Brara.C02203.1	No alias	component *(eL38) of large ribosomal-subunit (LSU) proteome	0.12	Orthogroups_2024-Update
Brara.E00357.1	No alias	component *(eL38) of large ribosomal-subunit (LSU) proteome	0.14	Orthogroups_2024-Update
Brara.I04090.1	No alias	component *(eL38) of large ribosomal-subunit (LSU) proteome	0.06	Orthogroups_2024-Update
Cre07.g325746	No alias	Ribosomal L38e protein family	0.08	Orthogroups_2024-Update
Glyma.08G100000	No alias	Ribosomal L38e protein family	0.08	Orthogroups_2024-Update
Glyma.13G221500	No alias	Ribosomal L38e protein family	0.02	Orthogroups_2024-Update
Glyma.13G345600	No alias	Ribosomal L38e protein family	0.03	Orthogroups_2024-Update
HORVU2Hr1G043220.1	No alias	component *(eL38) of large ribosomal-subunit (LSU) proteome	0.06	Orthogroups_2024-Update
Kfl00433_0040	kfl00433_0040_v1.1	(at3g59540 : 122.0) Ribosomal L38e protein family;...	0.05	Orthogroups_2024-Update
LOC_Os11g24610	No alias	60S ribosomal protein L38, putative, expressed	0.06	Orthogroups_2024-Update
MA_20588g0010	No alias	(at3g59540 : 129.0) Ribosomal L38e protein family;...	0.1	Orthogroups_2024-Update
PSME_00035421-RA	No alias	(at3g59540 : 127.0) Ribosomal L38e protein family;...	0.11	Orthogroups_2024-Update
Potri.007G131800	No alias	Ribosomal L38e protein family	0.1	Orthogroups_2024-Update
Potri.010G181200	No alias	Ribosomal L38e protein family	0.09	Orthogroups_2024-Update
Potri.017G020000	No alias	Ribosomal L38e protein family	0.03	Orthogroups_2024-Update
Pp1s227_122V6	No alias	60s ribosomal protein l38	0.14	Orthogroups_2024-Update
Pp1s288_10V6	No alias	60s ribosomal protein l38	0.14	Orthogroups_2024-Update
Pp1s67_172V6	No alias	60s ribosomal protein l38	0.18	Orthogroups_2024-Update
Seita.2G274700.1	No alias	component *(eL38) of large ribosomal-subunit (LSU) proteome	0.05	Orthogroups_2024-Update
Seita.2G333600.1	No alias	component *(eL38) of large ribosomal-subunit (LSU) proteome	0.03	Orthogroups_2024-Update
Seita.2G344700.1	No alias	component *(eL38) of large ribosomal-subunit (LSU) proteome	0.03	Orthogroups_2024-Update
Seita.6G231700.1	No alias	component *(eL38) of large ribosomal-subunit (LSU) proteome	0.17	Orthogroups_2024-Update
Sobic.002G331300.1	No alias	component *(eL38) of large ribosomal-subunit (LSU) proteome	0.04	Orthogroups_2024-Update
Sobic.007G184600.2	No alias	component *(eL38) of large ribosomal-subunit (LSU) proteome	0.15	Orthogroups_2024-Update
Sopen05g034080	No alias	Ribosomal L38e protein family	0.03	Orthogroups_2024-Update
Sopen11g004300	No alias	Ribosomal L38e protein family	0.19	Orthogroups_2024-Update
evm.model.tig00021719.6	No alias	(at3g59540 : 110.0) Ribosomal L38e protein family;...	0.18	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	InterProScan predictions
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005622	intracellular	IEA	InterProScan predictions
CC	GO:0005840	ribosome	IEA	InterProScan predictions
BP	GO:0006412	translation	IEA	InterProScan predictions
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	cellular amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044267	cellular protein metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044444	cytoplasmic part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
CC	GO:1990904	ribonucleoprotein complex	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003723	RNA binding	IEP	Predicted GO
MF	GO:0003746	translation elongation factor activity	IEP	Predicted GO
MF	GO:0004812	aminoacyl-tRNA ligase activity	IEP	Predicted GO
MF	GO:0004843	thiol-dependent ubiquitin-specific protease activity	IEP	Predicted GO
CC	GO:0005741	mitochondrial outer membrane	IEP	Predicted GO
BP	GO:0006399	tRNA metabolic process	IEP	Predicted GO
BP	GO:0006414	translational elongation	IEP	Predicted GO
BP	GO:0006418	tRNA aminoacylation for protein translation	IEP	Predicted GO
MF	GO:0008097	5S rRNA binding	IEP	Predicted GO
MF	GO:0008135	translation factor activity, RNA binding	IEP	Predicted GO
MF	GO:0008234	cysteine-type peptidase activity	IEP	Predicted GO
MF	GO:0008641	ubiquitin-like modifier activating enzyme activity	IEP	Predicted GO
CC	GO:0015934	large ribosomal subunit	IEP	Predicted GO
CC	GO:0016272	prefoldin complex	IEP	Predicted GO
MF	GO:0016874	ligase activity	IEP	Predicted GO
MF	GO:0016875	ligase activity, forming carbon-oxygen bonds	IEP	Predicted GO
MF	GO:0016877	ligase activity, forming carbon-sulfur bonds	IEP	Predicted GO
MF	GO:0019783	ubiquitin-like protein-specific protease activity	IEP	Predicted GO
MF	GO:0019843	rRNA binding	IEP	Predicted GO
CC	GO:0030684	preribosome	IEP	Predicted GO
CC	GO:0030688	preribosome, small subunit precursor	IEP	Predicted GO
CC	GO:0031968	organelle outer membrane	IEP	Predicted GO
BP	GO:0034660	ncRNA metabolic process	IEP	Predicted GO
MF	GO:0036459	thiol-dependent ubiquitinyl hydrolase activity	IEP	Predicted GO
BP	GO:0043038	amino acid activation	IEP	Predicted GO
BP	GO:0043039	tRNA aminoacylation	IEP	Predicted GO
CC	GO:0044391	ribosomal subunit	IEP	Predicted GO
CC	GO:0098805	whole membrane	IEP	Predicted GO
MF	GO:0101005	ubiquitinyl hydrolase activity	IEP	Predicted GO
MF	GO:0140101	catalytic activity, acting on a tRNA	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR002675	Ribosomal_L38e	34	100

External Links

No external refs found!

Solyc11g008510

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation