1. Home
  2. Species
  3. Solanum lycopersicum
  4. Sequence
  5. Solyc11g010220

Solyc11g010220


Description : Pentatricopeptide repeat-containing protein (AHRD V3.3 *** A0A118I7L5_CYNCS)


Gene families : OG_42_0007791 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0007791_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Solyc11g010220
Cluster HCCA clusters: Cluster_117

Target Alias Description ECC score Gene Family Method Actions
Bradi1g45170 No alias mitochondrial editing factor 9 0.02 Orthogroups_2024-Update
Bradi3g38620 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Orthogroups_2024-Update
GRMZM2G094586 No alias mitochondrial editing factor 9 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0002161 aminoacyl-tRNA editing activity IEP Predicted GO
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEP Predicted GO
MF GO:0004616 phosphogluconate dehydrogenase (decarboxylating) activity IEP Predicted GO
CC GO:0005576 extracellular region IEP Predicted GO
BP GO:0006650 glycerophospholipid metabolic process IEP Predicted GO
BP GO:0006793 phosphorus metabolic process IEP Predicted GO
BP GO:0006796 phosphate-containing compound metabolic process IEP Predicted GO
BP GO:0006813 potassium ion transport IEP Predicted GO
MF GO:0015079 potassium ion transmembrane transporter activity IEP Predicted GO
BP GO:0016310 phosphorylation IEP Predicted GO
MF GO:0016762 xyloglucan:xyloglucosyl transferase activity IEP Predicted GO
MF GO:0016798 hydrolase activity, acting on glycosyl bonds IEP Predicted GO
BP GO:0030258 lipid modification IEP Predicted GO
BP GO:0046486 glycerolipid metabolic process IEP Predicted GO
BP GO:0046488 phosphatidylinositol metabolic process IEP Predicted GO
BP GO:0046834 lipid phosphorylation IEP Predicted GO
BP GO:0046854 phosphatidylinositol phosphorylation IEP Predicted GO
CC GO:0048046 apoplast IEP Predicted GO
MF GO:0051499 D-aminoacyl-tRNA deacylase activity IEP Predicted GO
BP GO:0071805 potassium ion transmembrane transport IEP Predicted GO
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 68 98
IPR002885 Pentatricopeptide_repeat 40 66
IPR002885 Pentatricopeptide_repeat 225 248
IPR002885 Pentatricopeptide_repeat 327 349
IPR002885 Pentatricopeptide_repeat 192 221
IPR002885 Pentatricopeptide_repeat 99 129
IPR002885 Pentatricopeptide_repeat 430 452
IPR002885 Pentatricopeptide_repeat 131 160
IPR002885 Pentatricopeptide_repeat 161 189
IPR002885 Pentatricopeptide_repeat 253 301
IPR002885 Pentatricopeptide_repeat 354 402
No external refs found!