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  5. Solyc11g010260

Solyc11g010260


Description : Pentatricopeptide repeat-containing protein (AHRD V3.3 *** A0A103XU85_CYNCS)


Gene families : OG_42_0009668 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0009668_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Solyc11g010260
Cluster HCCA clusters: Cluster_105

Target Alias Description ECC score Gene Family Method Actions
HORVU6Hr1G005380.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Potri.004G054000 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.04 Orthogroups_2024-Update
Sobic.005G017100.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Sopen11g005040 No alias PPR repeat 0.05 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEP Predicted GO
MF GO:0004555 alpha,alpha-trehalase activity IEP Predicted GO
MF GO:0004650 polygalacturonase activity IEP Predicted GO
BP GO:0005984 disaccharide metabolic process IEP Predicted GO
BP GO:0005991 trehalose metabolic process IEP Predicted GO
MF GO:0008270 zinc ion binding IEP Predicted GO
BP GO:0009311 oligosaccharide metabolic process IEP Predicted GO
MF GO:0015927 trehalase activity IEP Predicted GO
BP GO:0015985 energy coupled proton transport, down electrochemical gradient IEP Predicted GO
BP GO:0015986 ATP synthesis coupled proton transport IEP Predicted GO
MF GO:0016798 hydrolase activity, acting on glycosyl bonds IEP Predicted GO
MF GO:0043167 ion binding IEP Predicted GO
MF GO:0043169 cation binding IEP Predicted GO
MF GO:0046872 metal ion binding IEP Predicted GO
MF GO:0046914 transition metal ion binding IEP Predicted GO
BP GO:1902600 proton transmembrane transport IEP Predicted GO
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 54 83
IPR002885 Pentatricopeptide_repeat 215 264
IPR002885 Pentatricopeptide_repeat 113 161
No external refs found!