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Pp1s132_180V6


Description : T19L18.13; transducin family protein / WD-40 repeat family protein [Arabidopsis thaliana]


Gene families : OG_42_0004084 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0004084_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Physcomitrella release: Pp1s132_180V6
Cluster HCCA clusters: Cluster_173

Target Alias Description ECC score Gene Family Method Actions
Potri.014G136700 No alias Transducin/WD40 repeat-like superfamily protein 0.02 Orthogroups_2024-Update
Sopen09g004150 No alias WD domain, G-beta repeat 0.02 Orthogroups_2024-Update
evm.model.contig_4408.4 No alias (at2g26060 : 174.0) embryo defective 1345 (emb1345);... 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Predicted GO
MF GO:0003723 RNA binding IEP Predicted GO
MF GO:0003743 translation initiation factor activity IEP Predicted GO
CC GO:0005852 eukaryotic translation initiation factor 3 complex IEP Predicted GO
BP GO:0006364 rRNA processing IEP Predicted GO
BP GO:0006413 translational initiation IEP Predicted GO
BP GO:0006888 ER to Golgi vesicle-mediated transport IEP Predicted GO
BP GO:0008037 cell recognition IEP Predicted GO
MF GO:0008135 translation factor activity, RNA binding IEP Predicted GO
MF GO:0008270 zinc ion binding IEP Predicted GO
CC GO:0008287 protein serine/threonine phosphatase complex IEP Predicted GO
BP GO:0016072 rRNA metabolic process IEP Predicted GO
MF GO:0019208 phosphatase regulator activity IEP Predicted GO
MF GO:0019888 protein phosphatase regulator activity IEP Predicted GO
BP GO:0022414 reproductive process IEP Predicted GO
CC GO:0030117 membrane coat IEP Predicted GO
CC GO:0030120 vesicle coat IEP Predicted GO
CC GO:0030127 COPII vesicle coat IEP Predicted GO
CC GO:0030289 protein phosphatase 4 complex IEP Predicted GO
MF GO:0031369 translation initiation factor binding IEP Predicted GO
CC GO:0032991 protein-containing complex IEP Predicted GO
BP GO:0034470 ncRNA processing IEP Predicted GO
CC GO:0044433 cytoplasmic vesicle part IEP Predicted GO
MF GO:0046914 transition metal ion binding IEP Predicted GO
BP GO:0048193 Golgi vesicle transport IEP Predicted GO
BP GO:0048544 recognition of pollen IEP Predicted GO
CC GO:1903293 phosphatase complex IEP Predicted GO
InterPro domains Description Start Stop
IPR001680 WD40_repeat 322 356
IPR001680 WD40_repeat 218 249
IPR001680 WD40_repeat 75 109
IPR001680 WD40_repeat 21 58
IPR001680 WD40_repeat 266 303
IPR001680 WD40_repeat 119 153
IPR001680 WD40_repeat 162 198
No external refs found!