1. Home
  2. Species
  3. Physcomitrella patens
  4. Sequence
  5. Pp1s135_32V6

Pp1s135_32V6


Description : nucleic acid binding


Gene families : OG_42_0005798 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0005798_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Physcomitrella release: Pp1s135_32V6
Cluster HCCA clusters: Cluster_292

Target Alias Description ECC score Gene Family Method Actions
LOC_Os01g42970 No alias zinc finger C-x8-C-x5-C-x3-H type family protein, expressed 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0046872 metal ion binding IEA InterProScan predictions
Toggle parental
Type GO Term Name Evidence Source
MF GO:0004519 endonuclease activity IEP Predicted GO
CC GO:0005576 extracellular region IEP Predicted GO
CC GO:0005618 cell wall IEP Predicted GO
BP GO:0005976 polysaccharide metabolic process IEP Predicted GO
BP GO:0006073 cellular glucan metabolic process IEP Predicted GO
MF GO:0016762 xyloglucan:xyloglucosyl transferase activity IEP Predicted GO
MF GO:0016835 carbon-oxygen lyase activity IEP Predicted GO
MF GO:0016836 hydro-lyase activity IEP Predicted GO
CC GO:0030312 external encapsulating structure IEP Predicted GO
MF GO:0030976 thiamine pyrophosphate binding IEP Predicted GO
BP GO:0044042 glucan metabolic process IEP Predicted GO
BP GO:0044264 cellular polysaccharide metabolic process IEP Predicted GO
MF GO:0046527 glucosyltransferase activity IEP Predicted GO
CC GO:0048046 apoplast IEP Predicted GO
MF GO:0052855 ADP-dependent NAD(P)H-hydrate dehydratase activity IEP Predicted GO
MF GO:1901681 sulfur compound binding IEP Predicted GO
InterPro domains Description Start Stop
IPR000571 Znf_CCCH 102 126
IPR000571 Znf_CCCH 618 642
IPR000571 Znf_CCCH 199 221
IPR000571 Znf_CCCH 563 588
IPR000571 Znf_CCCH 140 159
No external refs found!