Description : 40s ribosomal protein
Gene families : OG_42_0001926 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001926_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | Physcomitrella release: Pp1s136_175V6 | |
Cluster | HCCA clusters: Cluster_264 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
A4A49_00336 | No alias | 40s ribosomal protein s3-3 | 0.03 | Orthogroups_2024-Update | |
At2g31610 | No alias | 40S ribosomal protein S3-1... | 0.04 | Orthogroups_2024-Update | |
Bradi3g16150 | No alias | Ribosomal protein S3 family protein | 0.06 | Orthogroups_2024-Update | |
Brara.C01612.1 | No alias | component *(uS3) of small ribosomal-subunit (SSU) proteome | 0.03 | Orthogroups_2024-Update | |
Brara.C01619.1 | No alias | component *(uS3) of small ribosomal-subunit (SSU) proteome | 0.07 | Orthogroups_2024-Update | |
Brara.D01899.1 | No alias | component *(uS3) of small ribosomal-subunit (SSU) proteome | 0.05 | Orthogroups_2024-Update | |
GRMZM2G074300 | No alias | Ribosomal protein S3 family protein | 0.03 | Orthogroups_2024-Update | |
Glyma.09G156600 | No alias | Ribosomal protein S3 family protein | 0.04 | Orthogroups_2024-Update | |
Glyma.10G133100 | No alias | Ribosomal protein S3 family protein | 0.02 | Orthogroups_2024-Update | |
Glyma.10G133800 | No alias | Ribosomal protein S3 family protein | 0.05 | Orthogroups_2024-Update | |
Glyma.16G207300 | No alias | Ribosomal protein S3 family protein | 0.04 | Orthogroups_2024-Update | |
Glyma.20G083300 | No alias | Ribosomal protein S3 family protein | 0.03 | Orthogroups_2024-Update | |
Mp1g16730.1 | No alias | component RPS3 of SSU proteome | 0.04 | Orthogroups_2024-Update | |
PSME_00040312-RA | No alias | (at5g35530 : 390.0) Ribosomal protein S3 family protein;... | 0.02 | Orthogroups_2024-Update | |
Potri.018G049100 | No alias | Ribosomal protein S3 family protein | 0.02 | Orthogroups_2024-Update | |
Pp1s29_222V6 | No alias | 40s ribosomal protein | 0.08 | Orthogroups_2024-Update | |
Seita.2G385700.1 | No alias | component *(uS3) of small ribosomal-subunit (SSU) proteome | 0.03 | Orthogroups_2024-Update | |
Seita.6G050300.1 | No alias | component *(uS3) of small ribosomal-subunit (SSU) proteome | 0.09 | Orthogroups_2024-Update | |
Sobic.002G371100.1 | No alias | component *(uS3) of small ribosomal-subunit (SSU) proteome | 0.05 | Orthogroups_2024-Update | |
Sobic.007G053300.1 | No alias | component *(uS3) of small ribosomal-subunit (SSU) proteome | 0.05 | Orthogroups_2024-Update | |
Solyc08g061850 | No alias | Ribosomal protein S3 family protein (AHRD V3.3 *** AT5G35530.1) | 0.04 | Orthogroups_2024-Update | |
Solyc08g061960 | No alias | Ribosomal protein S3 family protein (AHRD V3.3 *** AT5G35530.1) | 0.08 | Orthogroups_2024-Update | |
Sopen07g020630 | No alias | Ribosomal protein S3, C-terminal domain | 0.09 | Orthogroups_2024-Update | |
Sopen08g017480 | No alias | Ribosomal protein S3, C-terminal domain | 0.03 | Orthogroups_2024-Update | |
evm.model.contig_2149.7 | No alias | (at5g35530 : 302.0) Ribosomal protein S3 family protein;... | 0.07 | Orthogroups_2024-Update | |
evm.model.tig00021462.41 | No alias | (at2g31610 : 358.0) Ribosomal protein S3 family protein;... | 0.02 | Orthogroups_2024-Update |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0003723 | RNA binding | IEA | InterProScan predictions |
MF | GO:0003735 | structural constituent of ribosome | IEA | InterProScan predictions |
CC | GO:0005840 | ribosome | IEA | InterProScan predictions |
BP | GO:0006412 | translation | IEA | InterProScan predictions |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0004066 | asparagine synthase (glutamine-hydrolyzing) activity | IEP | Predicted GO |
MF | GO:0004386 | helicase activity | IEP | Predicted GO |
BP | GO:0006364 | rRNA processing | IEP | Predicted GO |
BP | GO:0006528 | asparagine metabolic process | IEP | Predicted GO |
BP | GO:0006529 | asparagine biosynthetic process | IEP | Predicted GO |
BP | GO:0009066 | aspartate family amino acid metabolic process | IEP | Predicted GO |
BP | GO:0009067 | aspartate family amino acid biosynthetic process | IEP | Predicted GO |
CC | GO:0009523 | photosystem II | IEP | Predicted GO |
CC | GO:0009654 | photosystem II oxygen evolving complex | IEP | Predicted GO |
BP | GO:0016072 | rRNA metabolic process | IEP | Predicted GO |
MF | GO:0016879 | ligase activity, forming carbon-nitrogen bonds | IEP | Predicted GO |
MF | GO:0016884 | carbon-nitrogen ligase activity, with glutamine as amido-N-donor | IEP | Predicted GO |
CC | GO:0019898 | extrinsic component of membrane | IEP | Predicted GO |
CC | GO:1990204 | oxidoreductase complex | IEP | Predicted GO |
No external refs found! |