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  5. Pp1s137_152V6

Pp1s137_152V6


Description : contains ESTs D48362(S14517),AU063373(C61107),AU092957(C61107) similar to Arabidopsis thaliana chromosome 3, T22E16.240 unknown protein [Oryza sativa (japonica cultivar-group)]


Gene families : OG_42_0004022 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0004022_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Physcomitrella release: Pp1s137_152V6
Cluster HCCA clusters: Cluster_14

Target Alias Description ECC score Gene Family Method Actions
Glyma.02G250700 No alias Regulator of chromosome condensation (RCC1) family protein 0.03 Orthogroups_2024-Update
Glyma.14G066000 No alias Regulator of chromosome condensation (RCC1) family protein 0.03 Orthogroups_2024-Update
Glyma.18G034600 No alias Regulator of chromosome condensation (RCC1) family protein 0.02 Orthogroups_2024-Update
PSME_00017939-RA No alias (at3g55580 : 283.0) Regulator of chromosome condensation... 0.02 Orthogroups_2024-Update
Solyc05g052950 No alias Regulator of chromosome condensation (RCC1) family... 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000272 polysaccharide catabolic process IEP Predicted GO
MF GO:0003885 D-arabinono-1,4-lactone oxidase activity IEP Predicted GO
MF GO:0004190 aspartic-type endopeptidase activity IEP Predicted GO
MF GO:0004649 poly(ADP-ribose) glycohydrolase activity IEP Predicted GO
MF GO:0004743 pyruvate kinase activity IEP Predicted GO
BP GO:0005975 carbohydrate metabolic process IEP Predicted GO
BP GO:0007034 vacuolar transport IEP Predicted GO
MF GO:0015298 solute:cation antiporter activity IEP Predicted GO
MF GO:0015299 solute:proton antiporter activity IEP Predicted GO
BP GO:0016052 carbohydrate catabolic process IEP Predicted GO
MF GO:0016160 amylase activity IEP Predicted GO
MF GO:0016161 beta-amylase activity IEP Predicted GO
MF GO:0016491 oxidoreductase activity IEP Predicted GO
MF GO:0016899 oxidoreductase activity, acting on the CH-OH group of donors, oxygen as acceptor IEP Predicted GO
MF GO:0030955 potassium ion binding IEP Predicted GO
MF GO:0031420 alkali metal ion binding IEP Predicted GO
MF GO:0051920 peroxiredoxin activity IEP Predicted GO
BP GO:0055114 oxidation-reduction process IEP Predicted GO
MF GO:0070001 aspartic-type peptidase activity IEP Predicted GO
BP GO:1901575 organic substance catabolic process IEP Predicted GO
InterPro domains Description Start Stop
IPR000408 Reg_chr_condens 480 528
IPR000408 Reg_chr_condens 427 477
IPR000408 Reg_chr_condens 308 371
IPR000408 Reg_chr_condens 375 423
No external refs found!