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  5. Solyc11g011280

Solyc11g011280


Description : Rhamnogalacturonate lyase family protein (AHRD V3.3 *** AT2G22620.3)


Gene families : OG_42_0000589 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000589_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Solyc11g011280
Cluster HCCA clusters: Cluster_41

Target Alias Description ECC score Gene Family Method Actions
At1g09890 No alias Rhamnogalacturonate lyase family protein... 0.04 Orthogroups_2024-Update
At1g65210 No alias Galactose-binding protein [Source:UniProtKB/TrEMBL;Acc:Q9S9K1] 0.03 Orthogroups_2024-Update
Bradi3g57440 No alias Rhamnogalacturonate lyase family protein 0.02 Orthogroups_2024-Update
Glyma.04G091066 No alias Rhamnogalacturonate lyase family protein 0.03 Orthogroups_2024-Update
Glyma.09G201300 No alias Rhamnogalacturonate lyase family protein 0.03 Orthogroups_2024-Update
PSME_00024160-RA No alias (at1g09890 : 252.0) Rhamnogalacturonate lyase family... 0.02 Orthogroups_2024-Update
Potri.006G218500 No alias Rhamnogalacturonate lyase family protein 0.03 Orthogroups_2024-Update
Potri.006G253601 No alias Rhamnogalacturonate lyase family protein 0.03 Orthogroups_2024-Update
Seita.7G310700.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Seita.8G129700.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.007G173300.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Solyc04g014430 No alias Rhamnogalacturonate lyase family protein (AHRD V3.3 ***... 0.03 Orthogroups_2024-Update
Sopen04g030370 No alias Rhamnogalacturonate lyase family 0.02 Orthogroups_2024-Update
Sopen11g006070 No alias Rhamnogalacturonate lyase family 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003700 DNA-binding transcription factor activity IEP Predicted GO
BP GO:0015988 energy coupled proton transmembrane transport, against electrochemical gradient IEP Predicted GO
BP GO:0015991 ATP hydrolysis coupled proton transport IEP Predicted GO
MF GO:0019829 cation-transporting ATPase activity IEP Predicted GO
MF GO:0022853 active ion transmembrane transporter activity IEP Predicted GO
MF GO:0031625 ubiquitin protein ligase binding IEP Predicted GO
CC GO:0033178 proton-transporting two-sector ATPase complex, catalytic domain IEP Predicted GO
MF GO:0036442 proton-exporting ATPase activity IEP Predicted GO
MF GO:0042625 ATPase coupled ion transmembrane transporter activity IEP Predicted GO
MF GO:0044389 ubiquitin-like protein ligase binding IEP Predicted GO
MF GO:0044769 ATPase activity, coupled to transmembrane movement of ions, rotational mechanism IEP Predicted GO
MF GO:0046961 proton-transporting ATPase activity, rotational mechanism IEP Predicted GO
BP GO:0090662 ATP hydrolysis coupled transmembrane transport IEP Predicted GO
BP GO:0099131 ATP hydrolysis coupled ion transmembrane transport IEP Predicted GO
BP GO:0099132 ATP hydrolysis coupled cation transmembrane transport IEP Predicted GO
MF GO:0140110 transcription regulator activity IEP Predicted GO
InterPro domains Description Start Stop
IPR029413 RG-lyase_II 37 107
IPR029411 RG-lyase_III 123 299
No external refs found!