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  5. Solyc11g011300

Solyc11g011300


Description : Rhamnogalacturonate lyase family protein (AHRD V3.3 *** AT2G22620.3)


Gene families : OG_42_0000589 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000589_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Solyc11g011300
Cluster HCCA clusters: Cluster_39

Target Alias Description ECC score Gene Family Method Actions
Brara.F00648.1 No alias Unknown function 0.03 Orthogroups_2024-Update
LOC_Os08g44020 No alias rhamnogalacturonate lyase, putative, expressed 0.02 Orthogroups_2024-Update
Mp2g13570.1 No alias no hits & (original description: none) 0.02 Orthogroups_2024-Update
Mp2g13580.1 No alias no hits & (original description: none) 0.01 Orthogroups_2024-Update
Sopen04g030370 No alias Rhamnogalacturonate lyase family 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR010325 Rhamnogal_lyase 45 243
IPR029413 RG-lyase_II 398 469
IPR029411 RG-lyase_III 483 672
No external refs found!