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  5. Solyc01g098000

Solyc01g098000


Description : Elongation factor 1-beta (AHRD V3.3 *** D7KES3_ARALL)


Gene families : OG_42_0001570 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001570_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Solyc01g098000
Cluster HCCA clusters: Cluster_277

Target Alias Description ECC score Gene Family Method Actions
94371 No alias Glutathione S-transferase, C-terminal-like;Translation... 0.07 Orthogroups_2024-Update
Bradi1g18710 No alias Glutathione S-transferase, C-terminal-like;Translation... 0.1 Orthogroups_2024-Update
Bradi1g21550 No alias Translation elongation factor EF1B/ribosomal protein S6... 0.09 Orthogroups_2024-Update
Brara.B00827.1 No alias component *(eEF1B-beta/-delta) of eEF1B... 0.03 Orthogroups_2024-Update
Brara.C00882.1 No alias component *(eEF1B-beta/-delta) of eEF1B... 0.05 Orthogroups_2024-Update
Brara.H01903.1 No alias component *(eEF1B-beta/-delta) of eEF1B... 0.05 Orthogroups_2024-Update
Glyma.04G195100 No alias Translation elongation factor EF1B/ribosomal protein S6... 0.02 Orthogroups_2024-Update
Glyma.06G170900 No alias Translation elongation factor EF1B/ribosomal protein S6... 0.05 Orthogroups_2024-Update
HORVU2Hr1G022090.4 No alias component *(eEF1B-beta/-delta) of eEF1B... 0.05 Orthogroups_2024-Update
HORVU2Hr1G031450.6 No alias component *(eEF1B-beta/-delta) of eEF1B... 0.06 Orthogroups_2024-Update
Kfl00055_0060 kfl00055_0060_v1.1 (at1g30230 : 185.0) Glutathione S-transferase,... 0.03 Orthogroups_2024-Update
LOC_Os07g42300 No alias elongation factor protein, putative, expressed 0.05 Orthogroups_2024-Update
LOC_Os07g46750 No alias elongation factor protein, putative, expressed 0.05 Orthogroups_2024-Update
MA_102713g0020 No alias (q40680|ef1d1_orysa : 235.0) Elongation factor 1-delta 1... 0.09 Orthogroups_2024-Update
Mp8g01660.1 No alias component eEF1B-beta/-delta of eEF1B eEF1A-GDP-recycling complex 0.06 Orthogroups_2024-Update
PSME_00005810-RA No alias (q40680|ef1d1_orysa : 255.0) Elongation factor 1-delta 1... 0.05 Orthogroups_2024-Update
Pp1s145_172V6 No alias elongation factor 1-delta 1 0.02 Orthogroups_2024-Update
Seita.2G386600.1 No alias component *(eEF1B-beta/-delta) of eEF1B... 0.1 Orthogroups_2024-Update
Seita.2G421400.1 No alias component *(eEF1B-beta/-delta) of eEF1B... 0.08 Orthogroups_2024-Update
Sobic.002G373800.1 No alias component *(eEF1B-beta/-delta) of eEF1B... 0.06 Orthogroups_2024-Update
Sobic.002G406500.1 No alias component *(eEF1B-beta/-delta) of eEF1B... 0.11 Orthogroups_2024-Update
Solyc07g016150 No alias Elongation factor 1-beta (AHRD V3.3 *** A0A072UHR3_MEDTR) 0.06 Orthogroups_2024-Update
Sopen11g029840 No alias EF-1 guanine nucleotide exchange domain 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003746 translation elongation factor activity IEA InterProScan predictions
BP GO:0006414 translational elongation IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEP Predicted GO
MF GO:0003743 translation initiation factor activity IEP Predicted GO
MF GO:0003922 GMP synthase (glutamine-hydrolyzing) activity IEP Predicted GO
MF GO:0005198 structural molecule activity IEP Predicted GO
CC GO:0005575 cellular_component IEP Predicted GO
CC GO:0005622 intracellular IEP Predicted GO
CC GO:0005759 mitochondrial matrix IEP Predicted GO
CC GO:0005840 ribosome IEP Predicted GO
CC GO:0005852 eukaryotic translation initiation factor 3 complex IEP Predicted GO
BP GO:0006177 GMP biosynthetic process IEP Predicted GO
BP GO:0006352 DNA-templated transcription, initiation IEP Predicted GO
BP GO:0006364 rRNA processing IEP Predicted GO
BP GO:0006412 translation IEP Predicted GO
BP GO:0006413 translational initiation IEP Predicted GO
BP GO:0006518 peptide metabolic process IEP Predicted GO
BP GO:0006807 nitrogen compound metabolic process IEP Predicted GO
BP GO:0009119 ribonucleoside metabolic process IEP Predicted GO
BP GO:0009163 nucleoside biosynthetic process IEP Predicted GO
BP GO:0016072 rRNA metabolic process IEP Predicted GO
MF GO:0016884 carbon-nitrogen ligase activity, with glutamine as amido-N-donor IEP Predicted GO
BP GO:0019538 protein metabolic process IEP Predicted GO
MF GO:0019843 rRNA binding IEP Predicted GO
MF GO:0031369 translation initiation factor binding IEP Predicted GO
CC GO:0031974 membrane-enclosed lumen IEP Predicted GO
CC GO:0032991 protein-containing complex IEP Predicted GO
BP GO:0034641 cellular nitrogen compound metabolic process IEP Predicted GO
BP GO:0042278 purine nucleoside metabolic process IEP Predicted GO
BP GO:0042451 purine nucleoside biosynthetic process IEP Predicted GO
BP GO:0042455 ribonucleoside biosynthetic process IEP Predicted GO
BP GO:0043043 peptide biosynthetic process IEP Predicted GO
CC GO:0043226 organelle IEP Predicted GO
CC GO:0043228 non-membrane-bounded organelle IEP Predicted GO
CC GO:0043229 intracellular organelle IEP Predicted GO
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Predicted GO
CC GO:0043233 organelle lumen IEP Predicted GO
BP GO:0043603 cellular amide metabolic process IEP Predicted GO
BP GO:0043604 amide biosynthetic process IEP Predicted GO
BP GO:0044238 primary metabolic process IEP Predicted GO
BP GO:0044267 cellular protein metabolic process IEP Predicted GO
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP Predicted GO
CC GO:0044424 intracellular part IEP Predicted GO
CC GO:0044444 cytoplasmic part IEP Predicted GO
CC GO:0044464 cell part IEP Predicted GO
BP GO:0046037 GMP metabolic process IEP Predicted GO
BP GO:0046128 purine ribonucleoside metabolic process IEP Predicted GO
BP GO:0046129 purine ribonucleoside biosynthetic process IEP Predicted GO
BP GO:0051090 regulation of DNA-binding transcription factor activity IEP Predicted GO
BP GO:0065009 regulation of molecular function IEP Predicted GO
CC GO:0070013 intracellular organelle lumen IEP Predicted GO
BP GO:1901068 guanosine-containing compound metabolic process IEP Predicted GO
BP GO:1901070 guanosine-containing compound biosynthetic process IEP Predicted GO
BP GO:1901564 organonitrogen compound metabolic process IEP Predicted GO
BP GO:1901566 organonitrogen compound biosynthetic process IEP Predicted GO
BP GO:1901659 glycosyl compound biosynthetic process IEP Predicted GO
CC GO:1990904 ribonucleoprotein complex IEP Predicted GO
InterPro domains Description Start Stop
IPR014038 EF1B_bsu/dsu_GNE 145 232
No external refs found!