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  5. Pp1s154_52V6

Pp1s154_52V6


Description : ubiquitin ligase protein


Gene families : OG_42_0000717 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000717_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Physcomitrella release: Pp1s154_52V6
Cluster HCCA clusters: Cluster_27

Target Alias Description ECC score Gene Family Method Actions
101888 No alias Transducin/WD40 repeat-like superfamily protein 0.03 Orthogroups_2024-Update
141846 No alias Transducin/WD40 repeat-like superfamily protein 0.04 Orthogroups_2024-Update
171333 No alias Transducin/WD40 repeat-like superfamily protein 0.02 Orthogroups_2024-Update
98534 No alias SPA1-related 4 0.06 Orthogroups_2024-Update
At1g53090 No alias SPA4 [Source:UniProtKB/TrEMBL;Acc:A0A178WBA0] 0.03 Orthogroups_2024-Update
At2g46340 No alias SPA1 [Source:UniProtKB/TrEMBL;Acc:A0A178VSM9] 0.03 Orthogroups_2024-Update
Bradi2g15900 No alias SPA (suppressor of phyA-105) protein family 0.05 Orthogroups_2024-Update
Bradi2g48657 No alias SPA1-related 4 0.08 Orthogroups_2024-Update
Bradi3g57667 No alias Transducin/WD40 repeat-like superfamily protein 0.02 Orthogroups_2024-Update
Brara.A03144.1 No alias regulatory component *(SPA) of COP1-SPA light signal... 0.02 Orthogroups_2024-Update
Brara.C02328.1 No alias regulatory component *(SPA) of COP1-SPA light signal... 0.03 Orthogroups_2024-Update
Brara.E02608.1 No alias regulatory component *(SPA) of COP1-SPA light signal... 0.03 Orthogroups_2024-Update
GRMZM2G061602 No alias SPA1-related 4 0.02 Orthogroups_2024-Update
Glyma.02G267800 No alias Transducin/WD40 repeat-like superfamily protein 0.06 Orthogroups_2024-Update
Glyma.05G214900 No alias SPA1-related 2 0.05 Orthogroups_2024-Update
Glyma.12G224600 No alias SPA1-related 3 0.06 Orthogroups_2024-Update
Glyma.13G276700 No alias SPA1-related 3 0.05 Orthogroups_2024-Update
Glyma.14G049700 No alias Transducin/WD40 repeat-like superfamily protein 0.06 Orthogroups_2024-Update
HORVU3Hr1G068840.7 No alias component *(SPA) of substrate adaptor module of... 0.02 Orthogroups_2024-Update
HORVU6Hr1G079680.3 No alias component *(COP1) of COP1-SPA light signal transduction... 0.03 Orthogroups_2024-Update
LOC_Os02g53140 No alias COP1, putative, expressed 0.03 Orthogroups_2024-Update
LOC_Os05g49590 No alias suppressor of phythchrome A, putative, expressed 0.03 Orthogroups_2024-Update
Mp5g12010.1 No alias protein kinase (PEK). component COP1 of COP1-SPA E3... 0.03 Orthogroups_2024-Update
PSME_00014824-RA No alias (at2g32950 : 499.0) Represses photomorphogenesis and... 0.03 Orthogroups_2024-Update
PSME_00014826-RA No alias (at2g32950 : 186.0) Represses photomorphogenesis and... 0.03 Orthogroups_2024-Update
PSME_00042814-RA No alias (at3g15354 : 541.0) Encodes a member of the SPA... 0.02 Orthogroups_2024-Update
Potri.001G399600 No alias SPA1-related 3 0.03 Orthogroups_2024-Update
Potri.014G159300 No alias Transducin/WD40 repeat-like superfamily protein 0.03 Orthogroups_2024-Update
Seita.3G139600.1 No alias regulatory component *(SPA) of COP1-SPA light signal... 0.05 Orthogroups_2024-Update
Seita.5G302800.1 No alias component *(SPA) of substrate adaptor module of... 0.03 Orthogroups_2024-Update
Sobic.004G312600.1 No alias component *(COP1) of COP1-SPA light signal transduction... 0.03 Orthogroups_2024-Update
Sobic.009G238000.1 No alias regulatory component *(SPA) of COP1-SPA light signal... 0.02 Orthogroups_2024-Update
Solyc07g063120 No alias Ubiquitin ligase protein cop1, putative (AHRD V3.3 ***... 0.03 Orthogroups_2024-Update
Solyc12g005950 No alias COP1 homolog 0.05 Orthogroups_2024-Update
Solyc12g013840 No alias SPA1-related 3 (AHRD V3.3 *** AT3G15354.3) 0.03 Orthogroups_2024-Update
Sopen07g031310 No alias WD domain, G-beta repeat 0.04 Orthogroups_2024-Update
evm.model.tig00020964.35 No alias (at2g32950 : 280.0) Represses photomorphogenesis and... 0.01 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Predicted GO
BP GO:0000272 polysaccharide catabolic process IEP Predicted GO
MF GO:0003779 actin binding IEP Predicted GO
MF GO:0004014 adenosylmethionine decarboxylase activity IEP Predicted GO
MF GO:0004602 glutathione peroxidase activity IEP Predicted GO
CC GO:0005779 integral component of peroxisomal membrane IEP Predicted GO
BP GO:0005976 polysaccharide metabolic process IEP Predicted GO
BP GO:0006576 cellular biogenic amine metabolic process IEP Predicted GO
BP GO:0006595 polyamine metabolic process IEP Predicted GO
BP GO:0006596 polyamine biosynthetic process IEP Predicted GO
BP GO:0006597 spermine biosynthetic process IEP Predicted GO
BP GO:0006629 lipid metabolic process IEP Predicted GO
BP GO:0006720 isoprenoid metabolic process IEP Predicted GO
BP GO:0006771 riboflavin metabolic process IEP Predicted GO
MF GO:0008168 methyltransferase activity IEP Predicted GO
BP GO:0008215 spermine metabolic process IEP Predicted GO
BP GO:0008216 spermidine metabolic process IEP Predicted GO
BP GO:0008295 spermidine biosynthetic process IEP Predicted GO
BP GO:0008299 isoprenoid biosynthetic process IEP Predicted GO
BP GO:0008610 lipid biosynthetic process IEP Predicted GO
MF GO:0008686 3,4-dihydroxy-2-butanone-4-phosphate synthase activity IEP Predicted GO
BP GO:0009057 macromolecule catabolic process IEP Predicted GO
BP GO:0009231 riboflavin biosynthetic process IEP Predicted GO
BP GO:0009309 amine biosynthetic process IEP Predicted GO
MF GO:0010181 FMN binding IEP Predicted GO
BP GO:0016052 carbohydrate catabolic process IEP Predicted GO
MF GO:0016160 amylase activity IEP Predicted GO
MF GO:0016161 beta-amylase activity IEP Predicted GO
MF GO:0016491 oxidoreductase activity IEP Predicted GO
BP GO:0016559 peroxisome fission IEP Predicted GO
MF GO:0016741 transferase activity, transferring one-carbon groups IEP Predicted GO
MF GO:0016830 carbon-carbon lyase activity IEP Predicted GO
CC GO:0031231 intrinsic component of peroxisomal membrane IEP Predicted GO
CC GO:0031300 intrinsic component of organelle membrane IEP Predicted GO
CC GO:0031301 integral component of organelle membrane IEP Predicted GO
MF GO:0032553 ribonucleotide binding IEP Predicted GO
MF GO:0036094 small molecule binding IEP Predicted GO
BP GO:0042401 cellular biogenic amine biosynthetic process IEP Predicted GO
BP GO:0042726 flavin-containing compound metabolic process IEP Predicted GO
BP GO:0042727 flavin-containing compound biosynthetic process IEP Predicted GO
MF GO:0043167 ion binding IEP Predicted GO
MF GO:0043168 anion binding IEP Predicted GO
BP GO:0044106 cellular amine metabolic process IEP Predicted GO
CC GO:0044438 microbody part IEP Predicted GO
CC GO:0044439 peroxisomal part IEP Predicted GO
BP GO:0048285 organelle fission IEP Predicted GO
MF GO:0050662 coenzyme binding IEP Predicted GO
BP GO:0055114 oxidation-reduction process IEP Predicted GO
BP GO:0097164 ammonium ion metabolic process IEP Predicted GO
MF GO:0097367 carbohydrate derivative binding IEP Predicted GO
MF GO:1901265 nucleoside phosphate binding IEP Predicted GO
InterPro domains Description Start Stop
IPR001680 WD40_repeat 567 602
IPR001680 WD40_repeat 481 517
No external refs found!