1. Home
  2. Species
  3. Solanum lycopersicum
  4. Sequence
  5. Solyc11g013320

Solyc11g013320


Description : Rhomboid-like protein (AHRD V3.3 *** K4D6D6_SOLLC)


Gene families : OG_42_0000533 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000533_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Solyc11g013320
Cluster HCCA clusters: Cluster_123

Target Alias Description ECC score Gene Family Method Actions
A4A49_26820 No alias rhomboid-like protein 1 0.03 Orthogroups_2024-Update
At3g53780 No alias RHOMBOID-like protein 4 [Source:UniProtKB/Swiss-Prot;Acc:F4JBM4] 0.03 Orthogroups_2024-Update
PSME_00011417-RA No alias (at2g29050 : 87.4) RHOMBOID-like 1 (RBL1); FUNCTIONS IN:... 0.02 Orthogroups_2024-Update
Potri.015G142000 No alias RHOMBOID-like protein 3 0.03 Orthogroups_2024-Update
Seita.2G282000.1 No alias protease *(RBL) 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0004252 serine-type endopeptidase activity IEA InterProScan predictions
CC GO:0016021 integral component of membrane IEA InterProScan predictions
Toggle parental
Type GO Term Name Evidence Source
MF GO:0016757 transferase activity, transferring glycosyl groups IEP Predicted GO
MF GO:0016758 transferase activity, transferring hexosyl groups IEP Predicted GO
CC GO:0030118 clathrin coat IEP Predicted GO
CC GO:0030120 vesicle coat IEP Predicted GO
CC GO:0030125 clathrin vesicle coat IEP Predicted GO
CC GO:0030130 clathrin coat of trans-Golgi network vesicle IEP Predicted GO
CC GO:0030132 clathrin coat of coated pit IEP Predicted GO
CC GO:0044431 Golgi apparatus part IEP Predicted GO
CC GO:0044433 cytoplasmic vesicle part IEP Predicted GO
CC GO:0044459 plasma membrane part IEP Predicted GO
MF GO:0046912 transferase activity, transferring acyl groups, acyl groups converted into alkyl on transfer IEP Predicted GO
CC GO:0098796 membrane protein complex IEP Predicted GO
CC GO:0098797 plasma membrane protein complex IEP Predicted GO
InterPro domains Description Start Stop
IPR022764 Peptidase_S54_rhomboid_dom 119 257
No external refs found!