Pp1s163_119V6

Description : auxin response

Gene families : OG_42_0000050 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000050_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Physcomitrella release: Pp1s163_119V6
Cluster	HCCA clusters: Cluster_174

Target	Alias	Description	ECC score	Gene Family Method
117217	No alias	auxin response factor 6	0.03	Orthogroups_2024-Update
At1g19850	No alias	Auxin response factor [Source:UniProtKB/TrEMBL;Acc:A0A178W993]	0.03	Orthogroups_2024-Update
Bradi1g32547	No alias	auxin response factor 6	0.02	Orthogroups_2024-Update
Bradi4g01730	No alias	auxin response factor 8	0.02	Orthogroups_2024-Update
Bradi5g10950	No alias	auxin response factor 1	0.02	Orthogroups_2024-Update
Brara.G01136.1	No alias	ARF-type transcription factor	0.02	Orthogroups_2024-Update
Brara.G02126.1	No alias	ARF-type transcription factor	0.02	Orthogroups_2024-Update
Brara.I00676.1	No alias	ARF-type transcription factor	0.03	Orthogroups_2024-Update
GRMZM2G028980	No alias	auxin response factor 8	0.02	Orthogroups_2024-Update
GRMZM2G378580	No alias	auxin response factor 2	0.02	Orthogroups_2024-Update
Glyma.02G281700	No alias	auxin response factor 6	0.02	Orthogroups_2024-Update
Glyma.07G202200	No alias	Transcriptional factor B3 family protein /...	0.02	Orthogroups_2024-Update
Glyma.14G032700	No alias	auxin response factor 6	0.03	Orthogroups_2024-Update
Glyma.14G217700	No alias	Transcriptional factor B3 family protein /...	0.02	Orthogroups_2024-Update
Glyma.18G184500	No alias	auxin response factor 9	0.02	Orthogroups_2024-Update
Potri.018G063000	No alias	auxin response factor 19	0.02	Orthogroups_2024-Update
Pp1s6_240V6	No alias	auxin response	0.02	Orthogroups_2024-Update
Seita.3G321500.1	No alias	ARF-type transcription factor	0.02	Orthogroups_2024-Update
Seita.4G257800.1	No alias	ARF-type transcription factor	0.02	Orthogroups_2024-Update
Seita.5G004300.1	No alias	ARF-type transcription factor	0.03	Orthogroups_2024-Update
Sobic.004G037800.1	No alias	ARF-type transcription factor	0.02	Orthogroups_2024-Update
Solyc05g047460	No alias	Auxin Response Factor 7B	0.03	Orthogroups_2024-Update
Solyc08g008380	No alias	Auxin Response Factor 9B	0.02	Orthogroups_2024-Update
Solyc09g007810	No alias	Auxin Response Factor 16A	0.02	Orthogroups_2024-Update
Sopen00g003680	No alias	Auxin response factor	0.02	Orthogroups_2024-Update
Sopen04g034850	No alias	Auxin response factor	0.02	Orthogroups_2024-Update
Sopen05g027770	No alias	Auxin response factor	0.02	Orthogroups_2024-Update
Sopen07g023180	No alias	Auxin response factor	0.04	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	InterProScan predictions
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IEA	InterProScan predictions
BP	GO:0006355	regulation of transcription, DNA-templated	IEA	InterProScan predictions
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009719	response to endogenous stimulus	None	Extended
BP	GO:0009725	response to hormone	IEA	InterProScan predictions
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010033	response to organic substance	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0042221	response to chemical	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0004177	aminopeptidase activity	IEP	Predicted GO
MF	GO:0004435	phosphatidylinositol phospholipase C activity	IEP	Predicted GO
MF	GO:0004553	hydrolase activity, hydrolyzing O-glycosyl compounds	IEP	Predicted GO
MF	GO:0004559	alpha-mannosidase activity	IEP	Predicted GO
MF	GO:0004620	phospholipase activity	IEP	Predicted GO
MF	GO:0004629	phospholipase C activity	IEP	Predicted GO
BP	GO:0005996	monosaccharide metabolic process	IEP	Predicted GO
BP	GO:0006013	mannose metabolic process	IEP	Predicted GO
BP	GO:0006811	ion transport	IEP	Predicted GO
BP	GO:0006887	exocytosis	IEP	Predicted GO
BP	GO:0007165	signal transduction	IEP	Predicted GO
MF	GO:0008081	phosphoric diester hydrolase activity	IEP	Predicted GO
MF	GO:0008270	zinc ion binding	IEP	Predicted GO
MF	GO:0008417	fucosyltransferase activity	IEP	Predicted GO
BP	GO:0009314	response to radiation	IEP	Predicted GO
BP	GO:0009416	response to light stimulus	IEP	Predicted GO
BP	GO:0009581	detection of external stimulus	IEP	Predicted GO
BP	GO:0009582	detection of abiotic stimulus	IEP	Predicted GO
BP	GO:0009583	detection of light stimulus	IEP	Predicted GO
BP	GO:0009584	detection of visible light	IEP	Predicted GO
BP	GO:0009605	response to external stimulus	IEP	Predicted GO
BP	GO:0009628	response to abiotic stimulus	IEP	Predicted GO
MF	GO:0015075	ion transmembrane transporter activity	IEP	Predicted GO
MF	GO:0015079	potassium ion transmembrane transporter activity	IEP	Predicted GO
MF	GO:0015098	molybdate ion transmembrane transporter activity	IEP	Predicted GO
MF	GO:0015103	inorganic anion transmembrane transporter activity	IEP	Predicted GO
MF	GO:0015318	inorganic molecular entity transmembrane transporter activity	IEP	Predicted GO
BP	GO:0015689	molybdate ion transport	IEP	Predicted GO
MF	GO:0015923	mannosidase activity	IEP	Predicted GO
BP	GO:0016226	iron-sulfur cluster assembly	IEP	Predicted GO
MF	GO:0016298	lipase activity	IEP	Predicted GO
MF	GO:0016779	nucleotidyltransferase activity	IEP	Predicted GO
MF	GO:0016798	hydrolase activity, acting on glycosyl bonds	IEP	Predicted GO
MF	GO:0016846	carbon-sulfur lyase activity	IEP	Predicted GO
BP	GO:0018298	protein-chromophore linkage	IEP	Predicted GO
BP	GO:0019321	pentose metabolic process	IEP	Predicted GO
BP	GO:0019566	arabinose metabolic process	IEP	Predicted GO
BP	GO:0031163	metallo-sulfur cluster assembly	IEP	Predicted GO
BP	GO:0032940	secretion by cell	IEP	Predicted GO
BP	GO:0046373	L-arabinose metabolic process	IEP	Predicted GO
MF	GO:0046556	alpha-L-arabinofuranosidase activity	IEP	Predicted GO
BP	GO:0046903	secretion	IEP	Predicted GO
BP	GO:0051606	detection of stimulus	IEP	Predicted GO
BP	GO:0071805	potassium ion transmembrane transport	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR003340	B3_DNA-bd	137	238
IPR033389	AUX/IAA_dom	797	837
IPR010525	Auxin_resp	263	346

External Links

No external refs found!

Pp1s163_119V6

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation