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  5. Pp1s166_101V6

Pp1s166_101V6


Description : chromodomain helicase dna binding protein 6


Gene families : OG_42_0000148 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000148_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Physcomitrella release: Pp1s166_101V6
Cluster HCCA clusters: Cluster_195

Target Alias Description ECC score Gene Family Method Actions
102612 No alias chromatin remodeling 5 0.05 Orthogroups_2024-Update
A4A49_27543 No alias putative atp-dependent dna helicase chr12 0.05 Orthogroups_2024-Update
A4A49_56777 No alias chd3-type chromatin-remodeling factor pickle 0.03 Orthogroups_2024-Update
Bradi1g10360 No alias chromatin remodeling 1 0.02 Orthogroups_2024-Update
GRMZM2G010342 No alias chromatin remodeling 5 0.01 Orthogroups_2024-Update
Glyma.04G062400 No alias chromatin remodeling factor CHD3 (PICKLE) 0.01 Orthogroups_2024-Update
Glyma.10G250500 No alias Homeotic gene regulator 0.02 Orthogroups_2024-Update
LOC_Os03g01200 No alias SNF2 family N-terminal domain containing protein, expressed 0.01 Orthogroups_2024-Update
LOC_Os07g31450 No alias CHR4/MI-2-LIKE, putative, expressed 0.01 Orthogroups_2024-Update
MA_102992g0010 No alias (q7g8y3|isw2_orysa : 400.0) Probable chromatin... 0.01 Orthogroups_2024-Update
MA_104034g0010 No alias (at5g66750 : 811.0) Protein is similar to SWI2/SNF2... 0.02 Orthogroups_2024-Update
Mp5g06580.2 No alias chromatin remodeling factor (Snf2) 0.02 Orthogroups_2024-Update
Mp8g17660.1 No alias chromatin remodeling factor (Snf2) 0.02 Orthogroups_2024-Update
PSME_00043225-RA No alias (at2g25170 : 138.0) Encodes a SWI/SWF nuclear-localized... 0.01 Orthogroups_2024-Update
Potri.001G123400 No alias chromatin remodeling 4 0.02 Orthogroups_2024-Update
Potri.007G026700 No alias chromatin remodeling 1 0.03 Orthogroups_2024-Update
Pp1s65_183V6 No alias chromatin remodeling complex subunit 0.01 Orthogroups_2024-Update
Seita.3G058900.1 No alias SMARCA component *(SYD/BRM/MINU) 0.01 Orthogroups_2024-Update
Solyc06g065730 No alias chromatin remodeling factor CHD3 (PICKLE) (AHRD V3.3 ***... 0.01 Orthogroups_2024-Update
Solyc11g062010 No alias Chromatin structure-remodeling complex subunit snf21... 0.01 Orthogroups_2024-Update
Sopen06g024260 No alias SNF2 family N-terminal domain 0.02 Orthogroups_2024-Update
evm.model.tig00000144.188 No alias (at5g66750 : 92.4) Protein is similar to SWI2/SNF2... 0.01 Orthogroups_2024-Update
evm.model.tig00000802.67 No alias (at3g06010 : 465.0) Encodes AtCHR12, a SNF2/Brahma-type... 0.01 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0003774 motor activity IEP Predicted GO
MF GO:0003777 microtubule motor activity IEP Predicted GO
BP GO:0006486 protein glycosylation IEP Predicted GO
BP GO:0006928 movement of cell or subcellular component IEP Predicted GO
BP GO:0007017 microtubule-based process IEP Predicted GO
BP GO:0007018 microtubule-based movement IEP Predicted GO
MF GO:0008017 microtubule binding IEP Predicted GO
MF GO:0008092 cytoskeletal protein binding IEP Predicted GO
MF GO:0008378 galactosyltransferase activity IEP Predicted GO
MF GO:0015631 tubulin binding IEP Predicted GO
CC GO:0016020 membrane IEP Predicted GO
BP GO:0043413 macromolecule glycosylation IEP Predicted GO
BP GO:0070085 glycosylation IEP Predicted GO
InterPro domains Description Start Stop
IPR001650 Helicase_C 890 999
IPR000330 SNF2_N 593 854
IPR023780 Chromo_domain 503 549
No external refs found!