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  5. Solyc11g017290

Solyc11g017290


Description : Pentatricopeptide repeat-containing protein (AHRD V3.3 *** A0A118JW06_CYNCS)


Gene families : OG_42_0000001 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Solyc11g017290
Cluster HCCA clusters: Cluster_266

Target Alias Description ECC score Gene Family Method Actions
A4A49_18851 No alias pentatricopeptide repeat-containing protein 0.02 Orthogroups_2024-Update
At2g03880 No alias Pentatricopeptide repeat-containing protein At2g03880,... 0.02 Orthogroups_2024-Update
Bradi1g03670 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
Bradi2g58450 No alias Pentatricopeptide repeat (PPR-like) superfamily protein 0.03 Orthogroups_2024-Update
Bradi5g14000 No alias Pentatricopeptide repeat (PPR-like) superfamily protein 0.03 Orthogroups_2024-Update
Brara.G01460.1 No alias Unknown function 0.04 Orthogroups_2024-Update
GRMZM2G076257 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
GRMZM2G163359 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
Glyma.08G208902 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.04 Orthogroups_2024-Update
Glyma.13G313300 No alias Pentatricopeptide repeat (PPR-like) superfamily protein 0.03 Orthogroups_2024-Update
HORVU2Hr1G035330.2 No alias Unknown function 0.04 Orthogroups_2024-Update
HORVU2Hr1G081690.1 No alias RNA editing factor *(OTP86) 0.03 Orthogroups_2024-Update
HORVU3Hr1G080810.1 No alias RNA editing factor *(MEF10) 0.05 Orthogroups_2024-Update
HORVU4Hr1G014730.1 No alias Unknown function 0.03 Orthogroups_2024-Update
HORVU4Hr1G032070.2 No alias Unknown function 0.03 Orthogroups_2024-Update
HORVU5Hr1G071640.4 No alias Unknown function 0.04 Orthogroups_2024-Update
HORVU5Hr1G079090.7 No alias Unknown function 0.03 Orthogroups_2024-Update
HORVU6Hr1G057130.1 No alias Unknown function 0.02 Orthogroups_2024-Update
HORVU7Hr1G011570.2 No alias RNA editing factor *(CRR22) 0.03 Orthogroups_2024-Update
MA_10293513g0010 No alias (at4g13650 : 527.0) Pentatricopeptide repeat (PPR)... 0.02 Orthogroups_2024-Update
MA_168311g0010 No alias (at4g02750 : 377.0) Tetratricopeptide repeat (TPR)-like... 0.02 Orthogroups_2024-Update
MA_183278g0010 No alias (at3g12770 : 619.0) Encodes a pentatricopeptide repeat... 0.03 Orthogroups_2024-Update
PSME_00001463-RA No alias (at4g33170 : 587.0) Tetratricopeptide repeat (TPR)-like... 0.04 Orthogroups_2024-Update
PSME_00031833-RA No alias (at3g13770 : 501.0) Pentatricopeptide repeat (PPR)... 0.03 Orthogroups_2024-Update
PSME_00054674-RA No alias (at4g33170 : 289.0) Tetratricopeptide repeat (TPR)-like... 0.03 Orthogroups_2024-Update
PSME_00056424-RA No alias (at2g22070 : 461.0) pentatricopeptide (PPR)... 0.05 Orthogroups_2024-Update
PSME_00057163-RA No alias (at1g11290 : 707.0) Pentatricopeptide Repeat Protein... 0.03 Orthogroups_2024-Update
Potri.001G186500 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
Potri.001G466066 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
Potri.002G245200 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
Potri.004G071800 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
Seita.5G295700.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Sobic.010G197400.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Sopen11g024580 No alias PPR repeat family 0.04 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003700 DNA-binding transcription factor activity IEP Predicted GO
CC GO:0005779 integral component of peroxisomal membrane IEP Predicted GO
BP GO:0006952 defense response IEP Predicted GO
BP GO:0007031 peroxisome organization IEP Predicted GO
BP GO:0009607 response to biotic stimulus IEP Predicted GO
MF GO:0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups IEP Predicted GO
CC GO:0031231 intrinsic component of peroxisomal membrane IEP Predicted GO
CC GO:0031300 intrinsic component of organelle membrane IEP Predicted GO
CC GO:0031301 integral component of organelle membrane IEP Predicted GO
CC GO:0044438 microbody part IEP Predicted GO
CC GO:0044439 peroxisomal part IEP Predicted GO
MF GO:0046983 protein dimerization activity IEP Predicted GO
MF GO:0140110 transcription regulator activity IEP Predicted GO
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 74 117
IPR002885 Pentatricopeptide_repeat 173 220
IPR002885 Pentatricopeptide_repeat 405 453
IPR002885 Pentatricopeptide_repeat 305 352
IPR002885 Pentatricopeptide_repeat 549 578
IPR002885 Pentatricopeptide_repeat 248 274
IPR002885 Pentatricopeptide_repeat 147 172
IPR002885 Pentatricopeptide_repeat 277 300
IPR002885 Pentatricopeptide_repeat 480 504
No external refs found!