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  5. Pp1s168_28V6

Pp1s168_28V6


Description : coatomer subunit beta


Gene families : OG_42_0003181 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0003181_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Physcomitrella release: Pp1s168_28V6
Cluster HCCA clusters: Cluster_264

Target Alias Description ECC score Gene Family Method Actions
A4A49_19463 No alias coatomer subunit beta-1 0.05 Orthogroups_2024-Update
Bradi2g10910 No alias Coatomer, beta subunit 0.03 Orthogroups_2024-Update
Bradi2g10950 No alias Coatomer, beta subunit 0.04 Orthogroups_2024-Update
Brara.A00624.1 No alias subunit beta of cargo adaptor F-subcomplex 0.03 Orthogroups_2024-Update
Brara.H01346.1 No alias subunit beta of cargo adaptor F-subcomplex 0.03 Orthogroups_2024-Update
Brara.K01651.1 No alias subunit beta of cargo adaptor F-subcomplex 0.04 Orthogroups_2024-Update
Cre04.g217921 No alias Coatomer, beta subunit 0.03 Orthogroups_2024-Update
GRMZM2G094699 No alias Coatomer, beta subunit 0.02 Orthogroups_2024-Update
Glyma.08G222400 No alias Coatomer, beta subunit 0.04 Orthogroups_2024-Update
HORVU3Hr1G040270.4 No alias subunit beta of cargo adaptor F-subcomplex 0.02 Orthogroups_2024-Update
Kfl00013_0310 kfl00013_0310_v1.1 (at4g31480 : 1299.0) Coatomer, beta subunit; FUNCTIONS... 0.02 Orthogroups_2024-Update
LOC_Os01g17430 No alias coatomer subunit beta-1, putative, expressed 0.02 Orthogroups_2024-Update
Mp5g08450.1 No alias subunit beta of cargo adaptor F-subcomplex 0.03 Orthogroups_2024-Update
PSME_00008063-RA No alias (at4g31480 : 1445.0) Coatomer, beta subunit; FUNCTIONS... 0.07 Orthogroups_2024-Update
Potri.018G007400 No alias Coatomer, beta subunit 0.04 Orthogroups_2024-Update
Seita.5G038000.1 No alias subunit beta of cargo adaptor F-subcomplex 0.04 Orthogroups_2024-Update
Seita.5G398100.1 No alias subunit beta of cargo adaptor F-subcomplex 0.03 Orthogroups_2024-Update
Sobic.003G134800.1 No alias subunit beta of cargo adaptor F-subcomplex 0.05 Orthogroups_2024-Update
Solyc01g007150 No alias Coatomer subunit beta (AHRD V3.3 *** K4AST1_SOLLC) 0.03 Orthogroups_2024-Update
Solyc10g081920 No alias Coatomer subunit beta (AHRD V3.3 *** M1CQJ9_SOLTU) 0.03 Orthogroups_2024-Update
Sopen01g003130 No alias Adaptin N terminal region 0.03 Orthogroups_2024-Update
evm.model.tig00020553.156 No alias (at4g31480 : 943.0) Coatomer, beta subunit; FUNCTIONS... 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005198 structural molecule activity IEA InterProScan predictions
BP GO:0006886 intracellular protein transport IEA InterProScan predictions
BP GO:0016192 vesicle-mediated transport IEA InterProScan predictions
CC GO:0030117 membrane coat IEA InterProScan predictions
CC GO:0030126 COPI vesicle coat IEA InterProScan predictions
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Type GO Term Name Evidence Source
CC GO:0000151 ubiquitin ligase complex IEP Predicted GO
CC GO:0000152 nuclear ubiquitin ligase complex IEP Predicted GO
MF GO:0000166 nucleotide binding IEP Predicted GO
MF GO:0003774 motor activity IEP Predicted GO
MF GO:0003777 microtubule motor activity IEP Predicted GO
MF GO:0003824 catalytic activity IEP Predicted GO
MF GO:0003924 GTPase activity IEP Predicted GO
MF GO:0004427 inorganic diphosphatase activity IEP Predicted GO
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEP Predicted GO
MF GO:0004559 alpha-mannosidase activity IEP Predicted GO
MF GO:0005085 guanyl-nucleotide exchange factor activity IEP Predicted GO
MF GO:0005086 ARF guanyl-nucleotide exchange factor activity IEP Predicted GO
MF GO:0005488 binding IEP Predicted GO
MF GO:0005509 calcium ion binding IEP Predicted GO
MF GO:0005515 protein binding IEP Predicted GO
MF GO:0005524 ATP binding IEP Predicted GO
CC GO:0005680 anaphase-promoting complex IEP Predicted GO
CC GO:0005783 endoplasmic reticulum IEP Predicted GO
BP GO:0005975 carbohydrate metabolic process IEP Predicted GO
BP GO:0006013 mannose metabolic process IEP Predicted GO
BP GO:0006270 DNA replication initiation IEP Predicted GO
BP GO:0006891 intra-Golgi vesicle-mediated transport IEP Predicted GO
BP GO:0006928 movement of cell or subcellular component IEP Predicted GO
BP GO:0007017 microtubule-based process IEP Predicted GO
BP GO:0007018 microtubule-based movement IEP Predicted GO
MF GO:0008017 microtubule binding IEP Predicted GO
MF GO:0008092 cytoskeletal protein binding IEP Predicted GO
MF GO:0008144 drug binding IEP Predicted GO
MF GO:0008168 methyltransferase activity IEP Predicted GO
MF GO:0009678 hydrogen-translocating pyrophosphatase activity IEP Predicted GO
BP GO:0009966 regulation of signal transduction IEP Predicted GO
BP GO:0010646 regulation of cell communication IEP Predicted GO
MF GO:0015098 molybdate ion transmembrane transporter activity IEP Predicted GO
MF GO:0015631 tubulin binding IEP Predicted GO
BP GO:0015689 molybdate ion transport IEP Predicted GO
MF GO:0015923 mannosidase activity IEP Predicted GO
MF GO:0016462 pyrophosphatase activity IEP Predicted GO
MF GO:0016740 transferase activity IEP Predicted GO
MF GO:0016741 transferase activity, transferring one-carbon groups IEP Predicted GO
MF GO:0016787 hydrolase activity IEP Predicted GO
MF GO:0016790 thiolester hydrolase activity IEP Predicted GO
MF GO:0016798 hydrolase activity, acting on glycosyl bonds IEP Predicted GO
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP Predicted GO
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP Predicted GO
MF GO:0017076 purine nucleotide binding IEP Predicted GO
MF GO:0017111 nucleoside-triphosphatase activity IEP Predicted GO
CC GO:0017119 Golgi transport complex IEP Predicted GO
MF GO:0019899 enzyme binding IEP Predicted GO
BP GO:0023051 regulation of signaling IEP Predicted GO
CC GO:0030119 AP-type membrane coat adaptor complex IEP Predicted GO
CC GO:0030131 clathrin adaptor complex IEP Predicted GO
MF GO:0030554 adenyl nucleotide binding IEP Predicted GO
CC GO:0031461 cullin-RING ubiquitin ligase complex IEP Predicted GO
BP GO:0032012 regulation of ARF protein signal transduction IEP Predicted GO
MF GO:0032553 ribonucleotide binding IEP Predicted GO
MF GO:0032555 purine ribonucleotide binding IEP Predicted GO
MF GO:0032559 adenyl ribonucleotide binding IEP Predicted GO
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Predicted GO
MF GO:0036094 small molecule binding IEP Predicted GO
MF GO:0043167 ion binding IEP Predicted GO
MF GO:0043168 anion binding IEP Predicted GO
BP GO:0046578 regulation of Ras protein signal transduction IEP Predicted GO
BP GO:0048583 regulation of response to stimulus IEP Predicted GO
MF GO:0051020 GTPase binding IEP Predicted GO
BP GO:0051056 regulation of small GTPase mediated signal transduction IEP Predicted GO
MF GO:0097367 carbohydrate derivative binding IEP Predicted GO
MF GO:1901265 nucleoside phosphate binding IEP Predicted GO
BP GO:1902531 regulation of intracellular signal transduction IEP Predicted GO
InterPro domains Description Start Stop
IPR029446 COPB1_appendage_platform_dom 821 948
IPR011710 Coatomer_bsu_C 678 815
IPR002553 Clathrin/coatomer_adapt-like_N 23 486
No external refs found!