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  5. Pp1s16_329V6

Pp1s16_329V6


Description : lsm sm-like protein family member


Gene families : OG_42_0005127 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0005127_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Physcomitrella release: Pp1s16_329V6
Cluster HCCA clusters: Cluster_176

Target Alias Description ECC score Gene Family Method Actions
At1g21190 No alias Sm-like protein LSM3A [Source:UniProtKB/Swiss-Prot;Acc:Q9LMN4] 0.03 Orthogroups_2024-Update
Solyc11g005370 No alias Small nuclear ribonucleoprotein family protein (AHRD... 0.03 Orthogroups_2024-Update
evm.model.tig00020927.50 No alias (at1g21190 : 115.0) Small nuclear ribonucleoprotein... 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0001522 pseudouridine synthesis IEP Predicted GO
BP GO:0006066 alcohol metabolic process IEP Predicted GO
BP GO:0006605 protein targeting IEP Predicted GO
BP GO:0006720 isoprenoid metabolic process IEP Predicted GO
BP GO:0009451 RNA modification IEP Predicted GO
BP GO:0016093 polyprenol metabolic process IEP Predicted GO
BP GO:0019348 dolichol metabolic process IEP Predicted GO
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Predicted GO
CC GO:0030176 integral component of endoplasmic reticulum membrane IEP Predicted GO
MF GO:0030515 snoRNA binding IEP Predicted GO
CC GO:0031227 intrinsic component of endoplasmic reticulum membrane IEP Predicted GO
BP GO:0042254 ribosome biogenesis IEP Predicted GO
MF GO:0042393 histone binding IEP Predicted GO
BP GO:0044085 cellular component biogenesis IEP Predicted GO
CC GO:0044432 endoplasmic reticulum part IEP Predicted GO
BP GO:1901615 organic hydroxy compound metabolic process IEP Predicted GO
InterPro domains Description Start Stop
IPR001163 LSM_dom_euk/arc 16 92
No external refs found!