1. Home
  2. Species
  3. Physcomitrella patens
  4. Sequence
  5. Pp1s175_19V6

Pp1s175_19V6


Description : pectin methylesterase


Gene families : OG_42_0000087 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000087_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Physcomitrella release: Pp1s175_19V6
Cluster HCCA clusters: Cluster_4

Target Alias Description ECC score Gene Family Method Actions
A4A49_15905 No alias putative pectinesterase 8 0.03 Orthogroups_2024-Update
A4A49_32955 No alias putative pectinesterase 53 0.02 Orthogroups_2024-Update
A4A49_38924 No alias putative pectinesterase 53 0.03 Orthogroups_2024-Update
At2g21610 No alias Pectinesterase 11 [Source:UniProtKB/TrEMBL;Acc:A0A1P8AZ45] 0.03 Orthogroups_2024-Update
Bradi2g19420 No alias Pectin lyase-like superfamily protein 0.02 Orthogroups_2024-Update
Bradi4g00840 No alias Pectin lyase-like superfamily protein 0.02 Orthogroups_2024-Update
Brara.B00879.1 No alias pectin methylesterase 0.02 Orthogroups_2024-Update
Brara.B01312.1 No alias pectin methylesterase 0.03 Orthogroups_2024-Update
Brara.I05452.1 No alias pectin methylesterase 0.02 Orthogroups_2024-Update
GRMZM2G070913 No alias pectinesterase 11 0.02 Orthogroups_2024-Update
Glyma.01G066000 No alias Pectin lyase-like superfamily protein 0.02 Orthogroups_2024-Update
Glyma.01G066100 No alias Pectin lyase-like superfamily protein 0.02 Orthogroups_2024-Update
Glyma.01G066300 No alias Pectin lyase-like superfamily protein 0.05 Orthogroups_2024-Update
Glyma.02G294700 No alias Pectin lyase-like superfamily protein 0.02 Orthogroups_2024-Update
Glyma.07G125100 No alias Pectin lyase-like superfamily protein 0.04 Orthogroups_2024-Update
Glyma.07G173500 No alias Pectin lyase-like superfamily protein 0.02 Orthogroups_2024-Update
Glyma.16G083600 No alias Pectin lyase-like superfamily protein 0.03 Orthogroups_2024-Update
HORVU1Hr1G075860.1 No alias pectin methylesterase 0.02 Orthogroups_2024-Update
LOC_Os05g44600 No alias pectinesterase, putative, expressed 0.02 Orthogroups_2024-Update
LOC_Os07g41650 No alias pectinesterase, putative, expressed 0.03 Orthogroups_2024-Update
LOC_Os07g46190 No alias pectinesterase, putative, expressed 0.02 Orthogroups_2024-Update
LOC_Os12g37660 No alias pectinesterase, putative, expressed 0.04 Orthogroups_2024-Update
MA_101720g0010 No alias (at3g29090 : 389.0) Encodes an atypical pectin... 0.02 Orthogroups_2024-Update
Mp2g01420.1 No alias pectin methylesterase 0.02 Orthogroups_2024-Update
Mp2g19430.1 No alias pectin methylesterase 0.02 Orthogroups_2024-Update
PSME_00007923-RA No alias (at5g19730 : 228.0) Pectin lyase-like superfamily... 0.02 Orthogroups_2024-Update
PSME_00045911-RA No alias (at5g19730 : 469.0) Pectin lyase-like superfamily... 0.03 Orthogroups_2024-Update
PSME_00045931-RA No alias (at5g47500 : 448.0) Pectin lyase-like superfamily... 0.04 Orthogroups_2024-Update
Potri.005G012800 No alias Pectin lyase-like superfamily protein 0.02 Orthogroups_2024-Update
Potri.014G117100 No alias Pectin lyase-like superfamily protein 0.02 Orthogroups_2024-Update
Pp1s112_177V6 No alias pectin methylesterase 0.05 Orthogroups_2024-Update
Pp1s3_508V6 No alias pectinesterase ppe8b 0.03 Orthogroups_2024-Update
Pp1s45_249V6 No alias pectin methylesterase 0.05 Orthogroups_2024-Update
Pp1s55_167V6 No alias pectin methylesterase 0.06 Orthogroups_2024-Update
Pp1s67_89V6 No alias pectin methylesterase 0.05 Orthogroups_2024-Update
Seita.5G313900.1 No alias pectin methylesterase 0.03 Orthogroups_2024-Update
Sobic.002G370300.1 No alias pectin methylesterase 0.02 Orthogroups_2024-Update
Sobic.005G217101.1 No alias pectin methylesterase 0.02 Orthogroups_2024-Update
Solyc09g091730 No alias Pectinesterase (AHRD V3.3 *** K4CWJ9_SOLLC) 0.05 Orthogroups_2024-Update
Solyc12g008530 No alias Pectinesterase (AHRD V3.3 *** K4DBU1_SOLLC) 0.02 Orthogroups_2024-Update
Solyc12g099230 No alias Pectinesterase (AHRD V3.3 *** K4DHU4_SOLLC) 0.02 Orthogroups_2024-Update
Sopen01g030950 No alias Pectinesterase 0.02 Orthogroups_2024-Update
Sopen07g033560 No alias Pectinesterase 0.02 Orthogroups_2024-Update
Sopen10g033270 No alias Pectinesterase 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0030599 pectinesterase activity IEA InterProScan predictions
BP GO:0042545 cell wall modification IEA InterProScan predictions
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000271 polysaccharide biosynthetic process IEP Predicted GO
MF GO:0003856 3-dehydroquinate synthase activity IEP Predicted GO
MF GO:0004097 catechol oxidase activity IEP Predicted GO
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEP Predicted GO
MF GO:0004601 peroxidase activity IEP Predicted GO
CC GO:0005576 extracellular region IEP Predicted GO
CC GO:0005618 cell wall IEP Predicted GO
BP GO:0005975 carbohydrate metabolic process IEP Predicted GO
BP GO:0005976 polysaccharide metabolic process IEP Predicted GO
BP GO:0006073 cellular glucan metabolic process IEP Predicted GO
BP GO:0006950 response to stress IEP Predicted GO
BP GO:0006979 response to oxidative stress IEP Predicted GO
BP GO:0008152 metabolic process IEP Predicted GO
MF GO:0008194 UDP-glycosyltransferase activity IEP Predicted GO
MF GO:0008519 ammonium transmembrane transporter activity IEP Predicted GO
BP GO:0009250 glucan biosynthetic process IEP Predicted GO
BP GO:0010215 cellulose microfibril organization IEP Predicted GO
BP GO:0015696 ammonium transport IEP Predicted GO
CC GO:0016020 membrane IEP Predicted GO
BP GO:0016049 cell growth IEP Predicted GO
BP GO:0016051 carbohydrate biosynthetic process IEP Predicted GO
MF GO:0016209 antioxidant activity IEP Predicted GO
MF GO:0016491 oxidoreductase activity IEP Predicted GO
MF GO:0016679 oxidoreductase activity, acting on diphenols and related substances as donors IEP Predicted GO
MF GO:0016682 oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor IEP Predicted GO
MF GO:0016684 oxidoreductase activity, acting on peroxide as acceptor IEP Predicted GO
MF GO:0016740 transferase activity IEP Predicted GO
MF GO:0016757 transferase activity, transferring glycosyl groups IEP Predicted GO
MF GO:0016758 transferase activity, transferring hexosyl groups IEP Predicted GO
MF GO:0016759 cellulose synthase activity IEP Predicted GO
MF GO:0016760 cellulose synthase (UDP-forming) activity IEP Predicted GO
MF GO:0016762 xyloglucan:xyloglucosyl transferase activity IEP Predicted GO
MF GO:0016798 hydrolase activity, acting on glycosyl bonds IEP Predicted GO
MF GO:0016838 carbon-oxygen lyase activity, acting on phosphates IEP Predicted GO
BP GO:0030198 extracellular matrix organization IEP Predicted GO
BP GO:0030243 cellulose metabolic process IEP Predicted GO
BP GO:0030244 cellulose biosynthetic process IEP Predicted GO
CC GO:0030312 external encapsulating structure IEP Predicted GO
CC GO:0031225 anchored component of membrane IEP Predicted GO
BP GO:0033692 cellular polysaccharide biosynthetic process IEP Predicted GO
BP GO:0034637 cellular carbohydrate biosynthetic process IEP Predicted GO
MF GO:0035251 UDP-glucosyltransferase activity IEP Predicted GO
BP GO:0040007 growth IEP Predicted GO
BP GO:0043062 extracellular structure organization IEP Predicted GO
BP GO:0044042 glucan metabolic process IEP Predicted GO
BP GO:0044260 cellular macromolecule metabolic process IEP Predicted GO
BP GO:0044262 cellular carbohydrate metabolic process IEP Predicted GO
BP GO:0044264 cellular polysaccharide metabolic process IEP Predicted GO
MF GO:0045735 nutrient reservoir activity IEP Predicted GO
MF GO:0046527 glucosyltransferase activity IEP Predicted GO
CC GO:0048046 apoplast IEP Predicted GO
BP GO:0051273 beta-glucan metabolic process IEP Predicted GO
BP GO:0051274 beta-glucan biosynthetic process IEP Predicted GO
BP GO:0055114 oxidation-reduction process IEP Predicted GO
InterPro domains Description Start Stop
IPR000070 Pectinesterase_cat 76 361
No external refs found!