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  5. Solyc11g020890

Solyc11g020890


Description : 40S ribosomal S29-like protein (AHRD V3.3 *** A0A0B0MKW3_GOSAR)


Gene families : OG_42_0002354 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0002354_tree

Sequence : coding (download), protein (download)


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Type Description Actions
Neighborhood Solanum release: Solyc11g020890
Cluster HCCA clusters: Cluster_55

Target Alias Description ECC score Gene Family Method Actions
171412 No alias Ribosomal protein S14p/S29e family protein 0.03 Orthogroups_2024-Update
At4g33865 No alias 40S ribosomal protein S29... 0.03 Orthogroups_2024-Update
Brara.A00423.1 No alias component *(uS14) of small ribosomal-subunit (SSU) proteome 0.04 Orthogroups_2024-Update
Cre08.g358556 No alias Ribosomal protein S14p/S29e family protein 0.13 Orthogroups_2024-Update
HORVU4Hr1G037800.1 No alias component *(uS14) of small ribosomal-subunit (SSU) proteome 0.04 Orthogroups_2024-Update
PSME_00033957-RA No alias (at4g33865 : 112.0) Ribosomal protein S14p/S29e family... 0.07 Orthogroups_2024-Update
PSME_00037160-RA No alias (at4g33865 : 113.0) Ribosomal protein S14p/S29e family... 0.05 Orthogroups_2024-Update
Potri.009G090000 No alias Ribosomal protein S14p/S29e family protein 0.06 Orthogroups_2024-Update
Potri.014G017701 No alias Ribosomal protein S14p/S29e family protein 0.06 Orthogroups_2024-Update
Pp1s58_94V6 No alias 40s ribosomal protein s29 0.09 Orthogroups_2024-Update
Pp1s59_199V6 No alias 40s ribosomal protein s29 0.02 Orthogroups_2024-Update
Pp1s79_7V6 No alias 40s ribosomal protein s29 0.09 Orthogroups_2024-Update
Pp1s7_453V6 No alias 40s ribosomal protein s29 0.03 Orthogroups_2024-Update
Sobic.008G108601.1 No alias component *(uS14) of small ribosomal-subunit (SSU) proteome 0.1 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA InterProScan predictions
CC GO:0005622 intracellular IEA InterProScan predictions
CC GO:0005840 ribosome IEA InterProScan predictions
BP GO:0006412 translation IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0002161 aminoacyl-tRNA editing activity IEP Predicted GO
MF GO:0003723 RNA binding IEP Predicted GO
MF GO:0003724 RNA helicase activity IEP Predicted GO
MF GO:0003746 translation elongation factor activity IEP Predicted GO
MF GO:0004004 ATP-dependent RNA helicase activity IEP Predicted GO
CC GO:0005634 nucleus IEP Predicted GO
CC GO:0005759 mitochondrial matrix IEP Predicted GO
BP GO:0006364 rRNA processing IEP Predicted GO
BP GO:0006396 RNA processing IEP Predicted GO
BP GO:0006414 translational elongation IEP Predicted GO
MF GO:0008026 ATP-dependent helicase activity IEP Predicted GO
MF GO:0008186 RNA-dependent ATPase activity IEP Predicted GO
CC GO:0015934 large ribosomal subunit IEP Predicted GO
BP GO:0016070 RNA metabolic process IEP Predicted GO
BP GO:0016072 rRNA metabolic process IEP Predicted GO
CC GO:0030684 preribosome IEP Predicted GO
CC GO:0030688 preribosome, small subunit precursor IEP Predicted GO
CC GO:0031974 membrane-enclosed lumen IEP Predicted GO
BP GO:0034470 ncRNA processing IEP Predicted GO
BP GO:0034660 ncRNA metabolic process IEP Predicted GO
CC GO:0043227 membrane-bounded organelle IEP Predicted GO
CC GO:0043231 intracellular membrane-bounded organelle IEP Predicted GO
CC GO:0043233 organelle lumen IEP Predicted GO
CC GO:0044391 ribosomal subunit IEP Predicted GO
CC GO:0070013 intracellular organelle lumen IEP Predicted GO
MF GO:0070035 purine NTP-dependent helicase activity IEP Predicted GO
BP GO:0090304 nucleic acid metabolic process IEP Predicted GO
MF GO:0140098 catalytic activity, acting on RNA IEP Predicted GO
MF GO:0140101 catalytic activity, acting on a tRNA IEP Predicted GO
InterPro domains Description Start Stop
IPR001209 Ribosomal_S14 7 56
No external refs found!