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  5. Pp1s18_247V6

Pp1s18_247V6


Description : 5 -3 exoribonuclease 2


Gene families : OG_42_0000619 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000619_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Physcomitrella release: Pp1s18_247V6
Cluster HCCA clusters: Cluster_256

Target Alias Description ECC score Gene Family Method Actions
PSME_00023220-RA No alias (at1g75660 : 196.0) Encodes a protein with similarity to... 0.01 Orthogroups_2024-Update
PSME_00029106-RA No alias (at1g75660 : 194.0) Encodes a protein with similarity to... 0.01 Orthogroups_2024-Update
PSME_00041261-RA No alias (at1g75660 : 232.0) Encodes a protein with similarity to... 0.01 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA InterProScan predictions
MF GO:0004527 exonuclease activity IEA InterProScan predictions
MF GO:0008270 zinc ion binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0004672 protein kinase activity IEP Predicted GO
MF GO:0005507 copper ion binding IEP Predicted GO
BP GO:0006468 protein phosphorylation IEP Predicted GO
MF GO:0016301 kinase activity IEP Predicted GO
BP GO:0016310 phosphorylation IEP Predicted GO
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP Predicted GO
InterPro domains Description Start Stop
IPR001878 Znf_CCHC 263 277
IPR004859 Put_53exo 1 253
No external refs found!