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  5. Pp1s18_265V6

Pp1s18_265V6


Description : pre-mrna-splicing factor atp-dependent rna helicase


Gene families : OG_42_0000210 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000210_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Physcomitrella release: Pp1s18_265V6
Cluster HCCA clusters: Cluster_210

Target Alias Description ECC score Gene Family Method Actions
Glyma.05G146100 No alias RNA helicase family protein 0.01 Orthogroups_2024-Update
HORVU2Hr1G047870.2 No alias RNA helicase *(Prp16) 0.03 Orthogroups_2024-Update
HORVU4Hr1G052730.3 No alias RNA helicase Prp43 of Intron-Lariat Spliceosome complex 0.02 Orthogroups_2024-Update
Mp4g16380.1 No alias RNA helicase (Prp2) 0.02 Orthogroups_2024-Update
PSME_00021187-RA No alias (at4g18465 : 449.0) RNA helicase family protein;... 0.06 Orthogroups_2024-Update
Pp1s124_4V6 No alias atp-dependent rna 0.02 Orthogroups_2024-Update
Pp1s43_55V6 No alias deah (asp-glu-ala-his) box polypeptide 16 0.02 Orthogroups_2024-Update
Sopen10g028600 No alias Helicase associated domain (HA2) 0.01 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA InterProScan predictions
MF GO:0004386 helicase activity IEA InterProScan predictions
MF GO:0005524 ATP binding IEA InterProScan predictions
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR001650 Helicase_C 261 392
IPR011545 DEAD/DEAH_box_helicase_dom 62 214
IPR007502 Helicase-assoc_dom 455 543
IPR011709 DUF1605 605 681
No external refs found!